{"id":"https://openalex.org/W2962483983","doi":"https://doi.org/10.1109/isbi.2019.8759183","title":"A Skeleton and Deformation Based Model for Neonatal Pial Surface Reconstruction in Preterm Newborns","display_name":"A Skeleton and Deformation Based Model for Neonatal Pial Surface Reconstruction in Preterm Newborns","publication_year":2019,"publication_date":"2019-04-01","ids":{"openalex":"https://openalex.org/W2962483983","doi":"https://doi.org/10.1109/isbi.2019.8759183","mag":"2962483983"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2019.8759183","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759183","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100620514","display_name":"Mengting Liu","orcid":"https://orcid.org/0000-0003-4972-9006"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mengting Liu","raw_affiliation_strings":["USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049417588","display_name":"Claude Lepage","orcid":null},"institutions":[{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Claude Lepage","raw_affiliation_strings":["McConnell Brain Imaging Center, Montreal Neurological Institute, Montreal, Canada"],"affiliations":[{"raw_affiliation_string":"McConnell Brain Imaging Center, Montreal Neurological Institute, Montreal, Canada","institution_ids":["https://openalex.org/I1292859797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005779186","display_name":"Seun Jeon","orcid":"https://orcid.org/0000-0003-2817-3352"},"institutions":[{"id":"https://openalex.org/I1292859797","display_name":"Montreal Neurological Institute and Hospital","ror":"https://ror.org/05ghs6f64","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1292859797"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Seun Jeon","raw_affiliation_strings":["McConnell Brain Imaging Center, Montreal Neurological Institute, Montreal, Canada"],"affiliations":[{"raw_affiliation_string":"McConnell Brain Imaging Center, Montreal Neurological Institute, Montreal, Canada","institution_ids":["https://openalex.org/I1292859797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086414162","display_name":"Trevor Flynn","orcid":"https://orcid.org/0000-0001-5532-4027"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Trevor Flynn","raw_affiliation_strings":["Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114064107","display_name":"Shiyu Yuan","orcid":"https://orcid.org/0009-0002-2832-1829"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiyu Yuan","raw_affiliation_strings":["USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057797551","display_name":"Justin Kim","orcid":"https://orcid.org/0000-0002-6544-6797"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Justin Kim","raw_affiliation_strings":["USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014949118","display_name":"Arthur W. Toga","orcid":"https://orcid.org/0000-0001-7902-3755"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Arthur W. Toga","raw_affiliation_strings":["USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018703759","display_name":"A. James Barkovich","orcid":"https://orcid.org/0000-0003-4291-7346"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. James Barkovich","raw_affiliation_strings":["Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030100878","display_name":"Duan Xu","orcid":"https://orcid.org/0000-0003-0550-4235"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Duan Xu","raw_affiliation_strings":["Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011305571","display_name":"Alan C. Evans","orcid":"https://orcid.org/0000-0003-3841-6098"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan C. Evans","raw_affiliation_strings":["Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology and Biomedical Imaging, University of California, San Francisco, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017878656","display_name":"Hosung Kim","orcid":"https://orcid.org/0000-0002-2269-8644"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hosung Kim","raw_affiliation_strings":["USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA"],"affiliations":[{"raw_affiliation_string":"USC Stevens Neuroimaging and Informatics Institute, Keck School of Medicine of USC, University of Southern California, Los Angeles, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5100620514"],"corresponding_institution_ids":["https://openalex.org/I1174212"],"apc_list":null,"apc_paid":null,"fwci":3.2961,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.91533744,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"352","last_page":"355"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/skeletonization","display_name":"Skeletonization","score":0.8121345043182373},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.5844629406929016},{"id":"https://openalex.org/keywords/partial-volume","display_name":"Partial volume","score":0.511637270450592},{"id":"https://openalex.org/keywords/boundary","display_name":"Boundary (topology)","score":0.5024876594543457},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.40618669986724854},{"id":"https://openalex.org/keywords/biomedical-engineering","display_name":"Biomedical engineering","score":0.3607867956161499},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.3482266366481781},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.33497172594070435},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3208487629890442},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.29522931575775146},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2445220649242401},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.23970633745193481},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.21422281861305237}],"concepts":[{"id":"https://openalex.org/C23951316","wikidata":"https://www.wikidata.org/wiki/Q1984140","display_name":"Skeletonization","level":2,"score":0.8121345043182373},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.5844629406929016},{"id":"https://openalex.org/C82233179","wikidata":"https://www.wikidata.org/wiki/Q2054500","display_name":"Partial volume","level":2,"score":0.511637270450592},{"id":"https://openalex.org/C62354387","wikidata":"https://www.wikidata.org/wiki/Q875399","display_name":"Boundary (topology)","level":2,"score":0.5024876594543457},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.40618669986724854},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.3607867956161499},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.3482266366481781},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.33497172594070435},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3208487629890442},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.29522931575775146},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2445220649242401},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.23970633745193481},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.21422281861305237},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2019.8759183","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2019.8759183","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W1987353801","https://openalex.org/W1992998173","https://openalex.org/W2002134117","https://openalex.org/W2080800110","https://openalex.org/W2131339155","https://openalex.org/W2148157540","https://openalex.org/W2387546930","https://openalex.org/W2742335709","https://openalex.org/W2953130519"],"related_works":["https://openalex.org/W1573128140","https://openalex.org/W1966286925","https://openalex.org/W2089168353","https://openalex.org/W1970457826","https://openalex.org/W2021722477","https://openalex.org/W1605096437","https://openalex.org/W2160056785","https://openalex.org/W2420770795","https://openalex.org/W2169101840","https://openalex.org/W1977815680"],"abstract_inverted_index":{"Though":[0],"quantification":[1],"of":[2,9,20,59,82,91,95,101,150,173,188,215,226],"cortical":[3,122,198],"thickness":[4,199],"characterizes":[5],"a":[6,35,68],"main":[7],"aspect":[8],"morphology":[10],"in":[11,17],"developing":[12],"brains,":[13],"it":[14,137],"is":[15,107,124],"challenged":[16],"the":[18,43,50,57,64,77,80,89,92,96,102,111,116,120,129,133,139,143,147,151,159,164,170,174,186,189,216],"analysis":[19],"neonatal":[21],"brain":[22],"MRI":[23],"due":[24,109],"to":[25,40,110,132,169,228,243],"inaccurate":[26],"pial":[27,36,191],"surface":[28,37,131,192],"extraction.":[29],"In":[30],"this":[31,181],"study,":[32],"we":[33],"propose":[34],"reconstruction":[38,187],"method":[39,75],"address":[41],"for":[42],"relatively":[44],"large":[45],"partial":[46,85],"volume":[47,86,100],"(PV)":[48],"within":[49],"sulcal":[51,113],"basin.":[52],"The":[53,72,196,213],"new":[54,61,69],"approach":[55],"leverages":[56],"benefits":[58],"using":[60,138],"skeletonization":[62,74,165],"and":[63,115,239],"deformation":[65],"models":[66],"with":[67,88,206],"gradient":[70,140],"feature.":[71],"proposed":[73],"combines":[76],"voxels":[78,90],"representing":[79,146],"skeleton":[81],"cerebrospinal":[83],"fluid":[84],"(CSF-PV)":[87],"medial":[93],"plane":[94],"gray":[97],"matter":[98],"(GM)":[99],"sulcus":[103],"where":[104],"no":[105],"CSF-PV":[106],"estimated":[108],"squashed":[112],"bank":[114],"limited":[117],"resolution.":[118],"Subsequently,":[119],"outer":[121],"boundary":[123,161,176],"identified":[125,162],"by":[126,163,185],"first":[127],"deforming":[128],"initial":[130,160],"skeleton,":[134],"then":[135],"refining":[136],"model":[141],"characterizing":[142],"subtle":[144],"edges":[145],"\u201cground":[148,171],"truth\u201d":[149,172],"GM/CSF":[152,175],"boundary.":[153],"Our":[154],"landmark-based":[155],"evaluation":[156],"showed":[157],"that":[158],"was":[166,182,218,240],"already":[167],"close":[168,242],"(0.4":[177],"mm":[178,222,230,247],"distant).":[179],"Furthermore,":[180],"significantly":[183],"improved":[184],"final":[190],"(<;0.1":[193],"mm;":[194],"p<;0.0001).":[195],"mean":[197],"measured":[200],"through":[201],"our":[202],"pipeline":[203],"positively":[204],"correlated":[205],"postmenstrual":[207],"age":[208],"(PMA)":[209],"at":[210,223,231,248],"scan":[211],"(p<;0.0001).":[212],"range":[214],"measurement":[217],"biologically":[219],"reasonable":[220],"(1.4":[221],"28":[224],"weeks":[225],"PMA":[227],"2.2":[229],"term":[232],"equivalent":[233],"vs.":[234],"young":[235],"adults:":[236],"2.5-3.5":[237],"mm)":[238],"quite":[241],"past":[244],"reports":[245],"(2.1":[246],"term).":[249]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3}],"updated_date":"2026-01-20T17:24:06.736184","created_date":"2025-10-10T00:00:00"}
