{"id":"https://openalex.org/W2783582501","doi":"https://doi.org/10.1109/isbi.2018.8363735","title":"Unsupervised discovery of toxoplasma gondii motility phenotypes","display_name":"Unsupervised discovery of toxoplasma gondii motility phenotypes","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2783582501","doi":"https://doi.org/10.1109/isbi.2018.8363735","mag":"2783582501"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2018.8363735","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363735","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1801.02591","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033887560","display_name":"Mojtaba S. Fazli","orcid":"https://orcid.org/0000-0002-6082-2538"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Mojtaba S. Fazli","raw_affiliation_strings":["Department of Computer Science, The University of Georgia, Athens, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Georgia, Athens, GA, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044721148","display_name":"Stephen A. Vella","orcid":"https://orcid.org/0000-0002-0626-8708"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen A. Velia","raw_affiliation_strings":["University of Georgia, Athens, GA, US"],"affiliations":[{"raw_affiliation_string":"University of Georgia, Athens, GA, US","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032324284","display_name":"Silvia N.J. Moreno","orcid":"https://orcid.org/0000-0002-2041-6295"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Silvia N.J. Moreno","raw_affiliation_strings":["Department of Cellular Biology, The University of Georgia, Athens, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Cellular Biology, The University of Georgia, Athens, GA, USA","institution_ids":["https://openalex.org/I165733156"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046164250","display_name":"Shannon Quinn","orcid":"https://orcid.org/0000-0002-8916-6335"},"institutions":[{"id":"https://openalex.org/I165733156","display_name":"University of Georgia","ror":"https://ror.org/00te3t702","country_code":"US","type":"education","lineage":["https://openalex.org/I165733156"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shannon Quinn","raw_affiliation_strings":["Department of Computer Science, The University of Georgia, Athens, GA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, The University of Georgia, Athens, GA, USA","institution_ids":["https://openalex.org/I165733156"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5033887560"],"corresponding_institution_ids":["https://openalex.org/I165733156"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00388576,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"981","last_page":"984"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11155","display_name":"Toxoplasma gondii Research Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11155","display_name":"Toxoplasma gondii Research Studies","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/2405","display_name":"Parasitology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/motility","display_name":"Motility","score":0.9162405133247375},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7369400262832642},{"id":"https://openalex.org/keywords/toxoplasma-gondii","display_name":"Toxoplasma gondii","score":0.7084692716598511},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6698732972145081},{"id":"https://openalex.org/keywords/lytic-cycle","display_name":"Lytic cycle","score":0.6384250521659851},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.5695938467979431},{"id":"https://openalex.org/keywords/virulence","display_name":"Virulence","score":0.5384390950202942},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.46699634194374084},{"id":"https://openalex.org/keywords/gliding-motility","display_name":"Gliding motility","score":0.41520076990127563},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3225393295288086},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12167492508888245},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.06964766979217529}],"concepts":[{"id":"https://openalex.org/C58207958","wikidata":"https://www.wikidata.org/wiki/Q33596","display_name":"Motility","level":2,"score":0.9162405133247375},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7369400262832642},{"id":"https://openalex.org/C2778128430","wikidata":"https://www.wikidata.org/wiki/Q131003","display_name":"Toxoplasma gondii","level":3,"score":0.7084692716598511},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6698732972145081},{"id":"https://openalex.org/C182615771","wikidata":"https://www.wikidata.org/wiki/Q1369386","display_name":"Lytic cycle","level":3,"score":0.6384250521659851},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.5695938467979431},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.5384390950202942},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.46699634194374084},{"id":"https://openalex.org/C64745115","wikidata":"https://www.wikidata.org/wiki/Q618561","display_name":"Gliding motility","level":3,"score":0.41520076990127563},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3225393295288086},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12167492508888245},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.06964766979217529},{"id":"https://openalex.org/C159654299","wikidata":"https://www.wikidata.org/wiki/Q79460","display_name":"Antibody","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/isbi.2018.8363735","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363735","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1801.02591","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1801.02591","pdf_url":"https://arxiv.org/pdf/1801.02591","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"mag:2783582501","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/1801.02591","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1801.02591","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1801.02591","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1801.02591","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1801.02591","pdf_url":"https://arxiv.org/pdf/1801.02591","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2321621496","display_name":null,"funder_award_id":"AI-110027","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G5961315509","display_name":"Collaborative Research: ABI Innovation:Large-scale Analysis of the Evolution of Organellar Networks","funder_award_id":"1458766","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6996070937","display_name":null,"funder_award_id":"AI-096836","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2783582501.pdf","grobid_xml":"https://content.openalex.org/works/W2783582501.grobid-xml"},"referenced_works_count":16,"referenced_works":["https://openalex.org/W1554235224","https://openalex.org/W2027900864","https://openalex.org/W2082394813","https://openalex.org/W2099454718","https://openalex.org/W2101234009","https://openalex.org/W2118877769","https://openalex.org/W2120894842","https://openalex.org/W2132914434","https://openalex.org/W2167279371","https://openalex.org/W2171332611","https://openalex.org/W2269342634","https://openalex.org/W2585831843","https://openalex.org/W2743247826","https://openalex.org/W4249424055","https://openalex.org/W6675354045","https://openalex.org/W6679388247"],"related_works":["https://openalex.org/W2743247826","https://openalex.org/W3048839486","https://openalex.org/W2028813550","https://openalex.org/W2016023358","https://openalex.org/W135453840","https://openalex.org/W2886056927","https://openalex.org/W2898849057","https://openalex.org/W2765326483","https://openalex.org/W2790611808","https://openalex.org/W150206194","https://openalex.org/W2399978604","https://openalex.org/W2988999911","https://openalex.org/W2481500233","https://openalex.org/W2152469909","https://openalex.org/W2895027994","https://openalex.org/W1492875002","https://openalex.org/W2148896054","https://openalex.org/W3023510201","https://openalex.org/W2011065921","https://openalex.org/W2972707242"],"abstract_inverted_index":{"Toxoplasma":[0],"gondii":[1,75],"is":[2,23],"a":[3,10,15,79],"parasitic":[4],"protozoan":[5],"that":[6,12],"causes":[7],"disseminated":[8],"toxoplasmosis,":[9],"disease":[11],"afflicts":[13],"roughly":[14],"third":[16],"of":[17,41,52,62,92,121],"the":[18,50,59,86,103,113],"worlds":[19],"population.":[20],"Its":[21],"virulence":[22],"predicated":[24],"on":[25,102],"its":[26,39,46,53,100],"motility":[27,42,47,76,105],"and":[28,32,43,89,107,115],"ability":[29],"to":[30,58,98,111,119],"enter":[31],"exit":[33],"nucleated":[34],"cells;":[35],"therefore,":[36],"studies":[37],"elucidating":[38],"mechanism":[40],"in":[44,49,78],"particular,":[45],"patterns":[48,106],"context":[51],"lytic":[54],"cycle,":[55],"are":[56],"critical":[57],"eventual":[60],"development":[61],"therapeutic":[63],"strategies.":[64],"Here,":[65],"we":[66],"present":[67],"an":[68],"end-to-end":[69],"computational":[70],"pipeline":[71],"for":[72],"identifying":[73],"T.":[74],"phenotypes":[77],"completely":[80],"unsupervised,":[81],"data-driven":[82],"way.":[83],"We":[84],"track":[85],"parasites":[87],"before":[88],"after":[90],"addition":[91],"extracellular":[93],"Ca":[94],"<sup":[95],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[96],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">2+</sup>":[97],"study":[99],"effects":[101],"parasite":[104],"use":[108],"this":[109],"information":[110],"parameterize":[112],"motion":[114],"group":[116],"it":[117],"according":[118],"similarity":[120],"spatiotemporal":[122],"dynamics.":[123]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
