{"id":"https://openalex.org/W2766975021","doi":"https://doi.org/10.1109/isbi.2018.8363675","title":"Real-time automatic fetal brain extraction in fetal MRI by deep learning","display_name":"Real-time automatic fetal brain extraction in fetal MRI by deep learning","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2766975021","doi":"https://doi.org/10.1109/isbi.2018.8363675","mag":"2766975021"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2018.8363675","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363675","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},"type":"article","indexed_in":["arxiv","crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1710.09338","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027934129","display_name":"Seyed Sadegh Mohseni Salehi","orcid":"https://orcid.org/0000-0001-6085-3580"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Seyed Sadegh Mohseni Salehi","raw_affiliation_strings":["Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052394541","display_name":"Seyed Raein Hashemi","orcid":"https://orcid.org/0000-0001-6045-9807"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Seyed Raein Hashemi","raw_affiliation_strings":["Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009834124","display_name":"Clemente Velasco\u2010Annis","orcid":"https://orcid.org/0000-0002-7176-3852"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Clemente Velasco-Annis","raw_affiliation_strings":["Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021812575","display_name":"Abdelhakim Ouaalam","orcid":"https://orcid.org/0000-0002-1113-953X"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Abdelhakim Ouaalam","raw_affiliation_strings":["Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010807149","display_name":"Judy A. Estroff","orcid":"https://orcid.org/0000-0002-4578-2531"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Judy A. Estroff","raw_affiliation_strings":["Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083261801","display_name":"Deniz Erdo\u011fmu\u015f","orcid":"https://orcid.org/0000-0002-1114-3539"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deniz Erdogmus","raw_affiliation_strings":["Electrical and computer Engineering Department, Northeastern University, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and computer Engineering Department, Northeastern University, Boston, MA, USA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054913205","display_name":"Simon K. Warfield","orcid":"https://orcid.org/0000-0002-7659-3880"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]},{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon K. Warfield","raw_affiliation_strings":["Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058812679","display_name":"Ali Gholipour","orcid":"https://orcid.org/0000-0001-7699-4564"},"institutions":[{"id":"https://openalex.org/I1288882113","display_name":"Boston Children's Hospital","ror":"https://ror.org/00dvg7y05","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1288882113"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ali Gholipour","raw_affiliation_strings":["Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School"],"affiliations":[{"raw_affiliation_string":"Computational Radiology Laboratory, Boston Children's Hospital, and Harvard Medical School","institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5027934129"],"corresponding_institution_ids":["https://openalex.org/I1288882113","https://openalex.org/I136199984"],"apc_list":null,"apc_paid":null,"fwci":17.7702,"has_fulltext":false,"cited_by_count":96,"citation_normalized_percentile":{"value":0.99399972,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"720","last_page":"724"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11184","display_name":"Neonatal and fetal brain pathology","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7503310441970825},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6708481907844543},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6654400825500488},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6523722410202026},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5500404834747314},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5019371509552002},{"id":"https://openalex.org/keywords/fetal-head","display_name":"Fetal head","score":0.48474642634391785},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.4645737111568451},{"id":"https://openalex.org/keywords/s\u00f8rensen\u2013dice-coefficient","display_name":"S\u00f8rensen\u2013Dice coefficient","score":0.44359007477760315},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.4321137070655823},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.3778896927833557},{"id":"https://openalex.org/keywords/fetus","display_name":"Fetus","score":0.37280261516571045}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7503310441970825},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6708481907844543},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6654400825500488},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6523722410202026},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5500404834747314},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5019371509552002},{"id":"https://openalex.org/C2779811377","wikidata":"https://www.wikidata.org/wiki/Q5445900","display_name":"Fetal head","level":4,"score":0.48474642634391785},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.4645737111568451},{"id":"https://openalex.org/C163892561","wikidata":"https://www.wikidata.org/wiki/Q2613728","display_name":"S\u00f8rensen\u2013Dice coefficient","level":4,"score":0.44359007477760315},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.4321137070655823},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.3778896927833557},{"id":"https://openalex.org/C172680121","wikidata":"https://www.wikidata.org/wiki/Q26513","display_name":"Fetus","level":3,"score":0.37280261516571045},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C2779234561","wikidata":"https://www.wikidata.org/wiki/Q11995","display_name":"Pregnancy","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2018.8363675","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363675","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1710.09338","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1710.09338","pdf_url":"https://arxiv.org/pdf/1710.09338","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1710.09338","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1710.09338","pdf_url":"https://arxiv.org/pdf/1710.09338","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W232599568","https://openalex.org/W1522301498","https://openalex.org/W1564378691","https://openalex.org/W1901129140","https://openalex.org/W1903029394","https://openalex.org/W1935694390","https://openalex.org/W1994514622","https://openalex.org/W2002800263","https://openalex.org/W2024251722","https://openalex.org/W2029381583","https://openalex.org/W2052428745","https://openalex.org/W2135264048","https://openalex.org/W2332066482","https://openalex.org/W2395611524","https://openalex.org/W2464708700","https://openalex.org/W2605766009","https://openalex.org/W2685298434","https://openalex.org/W2729876886","https://openalex.org/W2754371940","https://openalex.org/W2951821408","https://openalex.org/W2963542991","https://openalex.org/W2964098128","https://openalex.org/W3104258355","https://openalex.org/W4308909683","https://openalex.org/W6639824700","https://openalex.org/W6657553216","https://openalex.org/W6718752587"],"related_works":["https://openalex.org/W2356597680","https://openalex.org/W2093471820","https://openalex.org/W50079190","https://openalex.org/W2114846443","https://openalex.org/W3102147106","https://openalex.org/W2111726165","https://openalex.org/W2347460059","https://openalex.org/W1984858032","https://openalex.org/W2616891703","https://openalex.org/W2055466819"],"abstract_inverted_index":{"Brain":[0],"segmentation":[1,66],"is":[2,17],"a":[3,63,90,113,120,208],"fundamental":[4],"first":[5],"step":[6],"in":[7,49,52,56,76,81,195,226],"neuroimage":[8],"analysis.":[9],"In":[10],"the":[11,24,28,33,73,134,183,196,223],"case":[12],"of":[13,27,72,143,151,161,191,212,246],"fetal":[14,34,38,74,78,153,224,229,247],"MRI,":[15],"it":[16,104],"particularly":[18],"challenging":[19,53,163,199],"and":[20,36,55,88,100,102,118,128,146,170,186,193,198,207,243],"important":[21],"due":[22],"to":[23,61,105,221],"arbitrary":[25],"orientation":[26],"fetus,":[29],"organs":[30],"that":[31,68,178],"surround":[32],"head,":[35],"intermittent":[37],"motion.":[39],"Several":[40],"promising":[41],"methods":[42,109,185],"have":[43],"been":[44],"proposed":[45],"but":[46],"are":[47,232],"limited":[48],"their":[50],"performance":[51,206],"cases":[54,164],"realtime":[57],"segmentation.":[58],"We":[59,132],"aimed":[60],"develop":[62],"fully":[64,92,115],"automatic":[65],"method":[67,121],"independently":[69],"segments":[70],"sections":[71],"brain":[75,138,154,173,225,248],"2D":[77,98],"MRI":[79,230],"slices":[80,231],"real-time.":[82],"To":[83],"this":[84],"end,":[85],"we":[86],"developed":[87],"evaluated":[89],"deep":[91],"convolutional":[93,116],"neural":[94],"network":[95,117,217],"based":[96,110,122,165],"on":[97,111,123,140,148,166],"U-net":[99,180],"autocontext,":[101],"compared":[103],"two":[106],"alternative":[107],"fast":[108],"1)":[112],"voxelwise":[114],"2)":[119],"SIFT":[124],"features,":[125],"random":[126,130],"forest":[127],"conditional":[129],"field.":[131],"trained":[133],"networks":[135],"with":[136],"manual":[137],"masks":[139],"250":[141],"stacks":[142,150,160],"training":[144],"images,":[145],"tested":[147],"17":[149],"normal":[152,197],"images":[155],"as":[156,158],"well":[157],"18":[159],"extremely":[162],"extreme":[167],"motion,":[168],"noise,":[169],"severely":[171],"abnormal":[172],"shape.":[174],"Experimental":[175],"results":[176],"show":[177],"our":[179,216],"approach":[181],"outperformed":[182],"other":[184],"achieved":[187],"average":[188],"Dice":[189],"metrics":[190],"96.52%":[192],"78.83%":[194],"test":[200,209],"sets,":[201],"respectively.":[202],"With":[203],"an":[204],"unprecedented":[205],"run":[210],"time":[211],"about":[213],"1":[214],"second,":[215],"can":[218,236],"be":[219],"used":[220],"segment":[222],"real-time":[227,238],"while":[228],"being":[233],"acquired.":[234],"This":[235],"enable":[237],"motion":[239,241],"tracking,":[240],"detection,":[242],"3D":[244],"reconstruction":[245],"MRI.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":14},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":15},{"year":2020,"cited_by_count":18},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-27T14:29:43.386196","created_date":"2025-10-10T00:00:00"}
