{"id":"https://openalex.org/W2727111598","doi":"https://doi.org/10.1109/isbi.2018.8363658","title":"The candidate multi-cut for cell segmentation","display_name":"The candidate multi-cut for cell segmentation","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2727111598","doi":"https://doi.org/10.1109/isbi.2018.8363658","mag":"2727111598"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2018.8363658","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363658","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1707.00907","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5035652164","display_name":"Jan Funke","orcid":"https://orcid.org/0000-0003-4388-7783"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Jan Funke","raw_affiliation_strings":["IRI, UPC Barcelona, Spain"],"affiliations":[{"raw_affiliation_string":"IRI, UPC Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100393899","display_name":"Chong Zhang","orcid":"https://orcid.org/0000-0002-2162-4344"},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Chong Zhang","raw_affiliation_strings":["SimBioSys, Universitat Pompeu Fabra, Spain"],"affiliations":[{"raw_affiliation_string":"SimBioSys, Universitat Pompeu Fabra, Spain","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081122949","display_name":"Tobias Pietzsch","orcid":"https://orcid.org/0000-0002-9477-3957"},"institutions":[{"id":"https://openalex.org/I4210159854","display_name":"Max Planck Institute of Molecular Cell Biology and Genetics","ror":"https://ror.org/05b8d3w18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210159854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tobias Pietzsch","raw_affiliation_strings":["MPI-CBG Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"MPI-CBG Dresden, Germany","institution_ids":["https://openalex.org/I4210159854"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Miguel A. Gonzalez Ballester","orcid":null},"institutions":[{"id":"https://openalex.org/I170486558","display_name":"Universitat Pompeu Fabra","ror":"https://ror.org/04n0g0b29","country_code":"ES","type":"education","lineage":["https://openalex.org/I170486558"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel A. Gonzalez Ballester","raw_affiliation_strings":["Universitat Pompeu Fabra, Barcelona, Catalunya, ES"],"affiliations":[{"raw_affiliation_string":"Universitat Pompeu Fabra, Barcelona, Catalunya, ES","institution_ids":["https://openalex.org/I170486558"]}]},{"author_position":"last","author":{"id":null,"display_name":"Stephan Saalfeld","orcid":null},"institutions":[{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephan Saalfeld","raw_affiliation_strings":["Janelia Research Campus, Ashburn, VA"],"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Ashburn, VA","institution_ids":["https://openalex.org/I195573530"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5035652164"],"corresponding_institution_ids":["https://openalex.org/I9617848"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00392122,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"649","last_page":"653"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9825000166893005,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/merge","display_name":"Merge (version control)","score":0.8046964406967163},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7678519487380981},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6986947655677795},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6570372581481934},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5640414953231812},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5414540767669678}],"concepts":[{"id":"https://openalex.org/C197129107","wikidata":"https://www.wikidata.org/wiki/Q1921621","display_name":"Merge (version control)","level":2,"score":0.8046964406967163},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7678519487380981},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6986947655677795},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6570372581481934},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5640414953231812},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5414540767669678},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/isbi.2018.8363658","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363658","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},{"id":"pmh:oai:arXiv.org:1707.00907","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1707.00907","pdf_url":"https://arxiv.org/pdf/1707.00907","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:recercat.cat:2072/331914","is_oa":true,"landing_page_url":"http://hdl.handle.net/10230/35407","pdf_url":"https://repositori.upf.edu/bitstreams/9c03c694-2fab-4bce-88e5-8506d39f7e29/download","source":{"id":"https://openalex.org/S4306402147","display_name":"RECERCAT (Consorci de Serveis Universitaris de Catalunya)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210090028","host_organization_name":"Consorci de Serveis Universitaris de Catalunya","host_organization_lineage":["https://openalex.org/I4210090028"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"mag:2727111598","is_oa":true,"landing_page_url":"http://export.arxiv.org/pdf/1707.00907","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"arXiv (Cornell University)","raw_type":null},{"id":"doi:10.48550/arxiv.1707.00907","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1707.00907","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1707.00907","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1707.00907","pdf_url":"https://arxiv.org/pdf/1707.00907","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16","score":0.47999998927116394}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W190039274","https://openalex.org/W1545506100","https://openalex.org/W1937315027","https://openalex.org/W1945243521","https://openalex.org/W1976032673","https://openalex.org/W2016909105","https://openalex.org/W2080481652","https://openalex.org/W2104145949","https://openalex.org/W2156727185","https://openalex.org/W2182679682","https://openalex.org/W2296226447","https://openalex.org/W6627890809"],"related_works":["https://openalex.org/W2963869116","https://openalex.org/W2184543986","https://openalex.org/W2779176574","https://openalex.org/W3205485865","https://openalex.org/W3185067502","https://openalex.org/W2995931523","https://openalex.org/W313983378","https://openalex.org/W2915793907","https://openalex.org/W2741576990","https://openalex.org/W2109313347","https://openalex.org/W2999795752","https://openalex.org/W1492697899","https://openalex.org/W2276155953","https://openalex.org/W2794502420","https://openalex.org/W2188342846","https://openalex.org/W2589765429","https://openalex.org/W2556875943","https://openalex.org/W2181384725","https://openalex.org/W1986085701","https://openalex.org/W3203033881"],"abstract_inverted_index":{"Two":[0],"successful":[1],"approaches":[2],"for":[3,88],"the":[4,11,21,44,63,67,71,86,105],"segmentation":[5],"of":[6,13,23,53,66,73,81,108,112,121,125,132],"biomedical":[7],"images":[8],"are":[9],"(1)":[10,70],"selection":[12,50],"segment":[14,54],"candidates":[15,55,80,94,113],"from":[16,56],"a":[17,28,36,57,82],"merge-tree,":[18,83],"and":[19,51,84,110,128,141],"(2)":[20,85],"clustering":[22,52,89,111],"small":[24],"superpixels":[25],"by":[26],"solving":[27],"Multi-Cut":[29,46,149],"problem.":[30],"In":[31],"this":[32],"paper,":[33],"we":[34,61,134],"introduce":[35],"model":[37],"that":[38,136],"unifies":[39],"both":[40],"approaches.":[41],"Our":[42],"model,":[43],"Candidate":[45],"(CMC),":[47],"allows":[48],"joint":[49],"merge-tree.":[58],"This":[59],"way,":[60],"overcome":[62],"respective":[64],"limitations":[65],"individual":[68],"methods:":[69],"space":[72],"possible":[74],"segmentations":[75,145],"is":[76],"not":[77],"constrained":[78],"to":[79],"decision":[87],"can":[90],"be":[91],"made":[92],"on":[93],"larger":[95,101],"than":[96,146],"superpixels,":[97],"using":[98,114],"features":[99],"over":[100],"contexts.":[102],"We":[103],"solve":[104],"optimization":[106],"problem":[107],"selecting":[109],"an":[115],"integer":[116],"linear":[117],"program.":[118],"On":[119],"datasets":[120],"2D":[122],"light":[123],"microscopy":[124,131],"cell":[126],"populations":[127],"3D":[129],"electron":[130],"neurons,":[133],"show":[135],"our":[137],"method":[138],"generalizes":[139],"well":[140],"generates":[142],"more":[143],"accurate":[144],"merge-tree":[147],"or":[148],"methods":[150],"alone.":[151]},"counts_by_year":[],"updated_date":"2026-03-25T23:56:10.502304","created_date":"2025-10-10T00:00:00"}