{"id":"https://openalex.org/W2805702523","doi":"https://doi.org/10.1109/isbi.2018.8363656","title":"Part-wise neuron segmentation using artificial templates","display_name":"Part-wise neuron segmentation using artificial templates","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2805702523","doi":"https://doi.org/10.1109/isbi.2018.8363656","mag":"2805702523"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2018.8363656","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363656","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047776758","display_name":"Sarun Gulyanon","orcid":"https://orcid.org/0000-0003-0858-7881"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Gulyanon","raw_affiliation_strings":["Computer and Information Science Department, Indiana University-Purdue University Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Science Department, Indiana University-Purdue University Indianapolis, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055613227","display_name":"Nima Sharifai","orcid":"https://orcid.org/0000-0002-4992-3629"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"N. Sharifai","raw_affiliation_strings":["University of Miami Miller School of Medicine, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Miami Miller School of Medicine, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049208889","display_name":"Michael D. Kim","orcid":"https://orcid.org/0000-0003-2103-6603"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.D. Kim","raw_affiliation_strings":["Molecular and Cellular Pharmacology Department, University of Miami, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Cellular Pharmacology Department, University of Miami, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102901263","display_name":"Akira Chiba","orcid":"https://orcid.org/0000-0003-4809-2402"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Chiba","raw_affiliation_strings":["Biology Department, University of Miami, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biology Department, University of Miami, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014714918","display_name":"Gavriil Tsechpenakis","orcid":"https://orcid.org/0000-0002-8864-3435"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Tsechpenakis","raw_affiliation_strings":["Computer and Information Science Department, Indiana University-Purdue University Indianapolis, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Science Department, Indiana University-Purdue University Indianapolis, USA","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.04386936,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":null,"first_page":"640","last_page":"644"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9735000133514404,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10638","display_name":"Optical measurement and interference techniques","score":0.9304999709129333,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/template","display_name":"Template","score":0.7925266623497009},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7608025074005127},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6311255097389221},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6204747557640076},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5499918460845947},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5233551859855652},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5094855427742004},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.48586127161979675},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.46967583894729614},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.46054786443710327},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14613160490989685},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07925817370414734}],"concepts":[{"id":"https://openalex.org/C82714645","wikidata":"https://www.wikidata.org/wiki/Q438331","display_name":"Template","level":2,"score":0.7925266623497009},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7608025074005127},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6311255097389221},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6204747557640076},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5499918460845947},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5233551859855652},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5094855427742004},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.48586127161979675},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.46967583894729614},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.46054786443710327},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14613160490989685},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07925817370414734},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2018.8363656","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363656","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1487334537","https://openalex.org/W1557830187","https://openalex.org/W1591850564","https://openalex.org/W1605456034","https://openalex.org/W1888801276","https://openalex.org/W1985161468","https://openalex.org/W1987869189","https://openalex.org/W1990804363","https://openalex.org/W1995151116","https://openalex.org/W1999244633","https://openalex.org/W2006229889","https://openalex.org/W2028325042","https://openalex.org/W2034372240","https://openalex.org/W2037316890","https://openalex.org/W2052314484","https://openalex.org/W2055605343","https://openalex.org/W2057773532","https://openalex.org/W2062869314","https://openalex.org/W2077843699","https://openalex.org/W2095905764","https://openalex.org/W2107432971","https://openalex.org/W2108961924","https://openalex.org/W2113576511","https://openalex.org/W2116040950","https://openalex.org/W2118961645","https://openalex.org/W2129534965","https://openalex.org/W2143516773","https://openalex.org/W2170064066","https://openalex.org/W2430391484","https://openalex.org/W2611747753","https://openalex.org/W6635457338","https://openalex.org/W6639551022","https://openalex.org/W6679367408"],"related_works":["https://openalex.org/W2121300814","https://openalex.org/W4231091074","https://openalex.org/W1886613375","https://openalex.org/W4236081792","https://openalex.org/W4250583430","https://openalex.org/W4234406076","https://openalex.org/W2010731026","https://openalex.org/W4311328601","https://openalex.org/W2360893094","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Our":[0],"goal":[1],"is":[2,34,50,62],"to":[3,63],"analyze":[4],"neuronal":[5],"morphology":[6],"during":[7],"development":[8],"using":[9,79,109,117],"artificially":[10],"created":[11],"templates.":[12],"Such":[13],"templates":[14],"serve":[15],"as":[16,91],"input":[17,65,99],"from":[18,29,40,68,122],"the":[19,26,46,95,98],"domain":[20],"expertise:":[21],"a":[22,36,80,86],"standardized":[23],"representation":[24],"of":[25,94],"neuron,":[27],"independent":[28],"imaging":[30],"modalities":[31],"and":[32,42,59,71,129],"resolution,":[33],"what":[35],"neurobiologist":[37],"can":[38],"provide":[39],"knowledge":[41],"qualitative":[43],"observations":[44],"in":[45],"microscope.":[47],"A":[48],"template":[49,96],"divided":[51],"into":[52],"context-specific":[53],"(topology,":[54],"shape,":[55],"and/or":[56],"function)":[57],"compartments,":[58],"our":[60,115],"task":[61],"segment":[64],"neuron":[66],"volumes":[67],"their":[69],"surroundings":[70],"partition":[72],"them":[73],"accordingly.":[74],"We":[75,83,113],"solve":[76],"this":[77],"problem":[78],"global-to-local":[81],"approach.":[82],"first":[84],"employ":[85],"global":[87],"transformation":[88],"that":[89],"serves":[90],"part-wise":[92],"alignment":[93],"with":[97],"volume.":[100],"Then,":[101],"we":[102],"use":[103],"local,":[104],"deformable":[105],"compartment":[106],"shape":[107],"registration":[108],"MRF-based":[110],"free-form":[111],"deformations.":[112],"validated":[114],"results":[116],"aCC":[118],"motorneuron":[119],"image":[120],"stacks":[121],"larva":[123],"Drosophila,":[124],"at":[125],"multiple":[126],"developmental":[127],"instances":[128],"different":[130],"spatial":[131],"resolutions.":[132]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}