{"id":"https://openalex.org/W2807014195","doi":"https://doi.org/10.1109/isbi.2018.8363655","title":"Automatic body localization and brain ventricle segmentation in 3D high frequency ultrasound images of mouse embryos","display_name":"Automatic body localization and brain ventricle segmentation in 3D high frequency ultrasound images of mouse embryos","publication_year":2018,"publication_date":"2018-04-01","ids":{"openalex":"https://openalex.org/W2807014195","doi":"https://doi.org/10.1109/isbi.2018.8363655","mag":"2807014195","pmid":"https://pubmed.ncbi.nlm.nih.gov/30906506"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2018.8363655","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363655","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027879759","display_name":"Jen-Wei Kuo","orcid":"https://orcid.org/0000-0001-7340-0150"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jen-wei Kuo","raw_affiliation_strings":["Electrical and Computer Engineering, Tandon School of Engineering, New York University, Brooklyn, USA","Electrical and Computer Engineering, New York University, Brooklyn, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Tandon School of Engineering, New York University, Brooklyn, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Electrical and Computer Engineering, New York University, Brooklyn, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101858604","display_name":"Ziming Qiu","orcid":"https://orcid.org/0000-0002-5328-0443"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ziming Qiu","raw_affiliation_strings":["Electrical and Computer Engineering, Tandon School of Engineering, New York University, Brooklyn, USA","Electrical and Computer Engineering, New York University, Brooklyn, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Tandon School of Engineering, New York University, Brooklyn, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Electrical and Computer Engineering, New York University, Brooklyn, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003105711","display_name":"Orlando Aristiz\u00e1bal","orcid":"https://orcid.org/0000-0002-9912-135X"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]},{"id":"https://openalex.org/I4210132419","display_name":"Riverside Research Institute","ror":"https://ror.org/02tvg0w73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210132419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Orlando Aristizabal","raw_affiliation_strings":["F. L. Lizzi Center for Biomedical Engineering, Riverside Research, New York, USA","Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, USA"],"affiliations":[{"raw_affiliation_string":"F. L. Lizzi Center for Biomedical Engineering, Riverside Research, New York, USA","institution_ids":["https://openalex.org/I4210132419"]},{"raw_affiliation_string":"Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076167293","display_name":"Jonathan Mamou","orcid":"https://orcid.org/0000-0002-9412-165X"},"institutions":[{"id":"https://openalex.org/I4210132419","display_name":"Riverside Research Institute","ror":"https://ror.org/02tvg0w73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210132419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan Mamou","raw_affiliation_strings":["F. L. Lizzi Center for Biomedical Engineering, Riverside Research, New York, USA","Riverside Research, F. L. Lizzi Center for Biomedical Engineering, New York, USA"],"affiliations":[{"raw_affiliation_string":"F. L. Lizzi Center for Biomedical Engineering, Riverside Research, New York, USA","institution_ids":["https://openalex.org/I4210132419"]},{"raw_affiliation_string":"Riverside Research, F. L. Lizzi Center for Biomedical Engineering, New York, USA","institution_ids":["https://openalex.org/I4210132419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035965941","display_name":"Daniel H. Turnbull","orcid":"https://orcid.org/0000-0003-0889-5155"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel H. Turnbull","raw_affiliation_strings":["Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, USA"],"affiliations":[{"raw_affiliation_string":"Skirball Institute of Biomolecular Medicine, New York University School of Medicine, New York, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085652152","display_name":"Jeffrey A. Ketterling","orcid":"https://orcid.org/0000-0002-1389-7756"},"institutions":[{"id":"https://openalex.org/I4210132419","display_name":"Riverside Research Institute","ror":"https://ror.org/02tvg0w73","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210132419"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeffrey Ketterling","raw_affiliation_strings":["F. L. Lizzi Center for Biomedical Engineering, Riverside Research, New York, USA","Riverside Research, F. L. Lizzi Center for Biomedical Engineering, New York, USA"],"affiliations":[{"raw_affiliation_string":"F. L. Lizzi Center for Biomedical Engineering, Riverside Research, New York, USA","institution_ids":["https://openalex.org/I4210132419"]},{"raw_affiliation_string":"Riverside Research, F. L. Lizzi Center for Biomedical Engineering, New York, USA","institution_ids":["https://openalex.org/I4210132419"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100319002","display_name":"Yao Wang","orcid":"https://orcid.org/0000-0002-6769-6239"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yao Wang","raw_affiliation_strings":["Electrical and Computer Engineering, Tandon School of Engineering, New York University, Brooklyn, USA","Electrical and Computer Engineering, New York University, Brooklyn, USA"],"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, Tandon School of Engineering, New York University, Brooklyn, USA","institution_ids":["https://openalex.org/I57206974"]},{"raw_affiliation_string":"Electrical and Computer Engineering, New York University, Brooklyn, USA","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5027879759"],"corresponding_institution_ids":["https://openalex.org/I57206974"],"apc_list":null,"apc_paid":null,"fwci":0.8346,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72257608,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"2018","issue":null,"first_page":"635","last_page":"639"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11677","display_name":"Congenital heart defects research","score":0.9828000068664551,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12264","display_name":"Tissue Engineering and Regenerative Medicine","score":0.949999988079071,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10775","display_name":"Generative Adversarial Networks and Image Synthesis","score":0.9384999871253967,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7579114437103271},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7562320232391357},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.6642787456512451},{"id":"https://openalex.org/keywords/thresholding","display_name":"Thresholding","score":0.6625319123268127},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6206797361373901},{"id":"https://openalex.org/keywords/s\u00f8rensen\u2013dice-coefficient","display_name":"S\u00f8rensen\u2013Dice coefficient","score":0.5752965211868286},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5184304714202881},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4479859173297882},{"id":"https://openalex.org/keywords/region-of-interest","display_name":"Region of interest","score":0.41854628920555115},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4129413962364197},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.36649608612060547}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7579114437103271},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7562320232391357},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6642787456512451},{"id":"https://openalex.org/C191178318","wikidata":"https://www.wikidata.org/wiki/Q2256906","display_name":"Thresholding","level":3,"score":0.6625319123268127},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6206797361373901},{"id":"https://openalex.org/C163892561","wikidata":"https://www.wikidata.org/wiki/Q2613728","display_name":"S\u00f8rensen\u2013Dice coefficient","level":4,"score":0.5752965211868286},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5184304714202881},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4479859173297882},{"id":"https://openalex.org/C19609008","wikidata":"https://www.wikidata.org/wiki/Q2138203","display_name":"Region of interest","level":2,"score":0.41854628920555115},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4129413962364197},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.36649608612060547}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/isbi.2018.8363655","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2018.8363655","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018)","raw_type":"proceedings-article"},{"id":"pmid:30906506","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30906506","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Symposium on Biomedical Imaging","raw_type":null},{"id":"pmh:oai:europepmc.org:5412302","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6429560","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W2041114474","https://openalex.org/W2068603597","https://openalex.org/W2118545461","https://openalex.org/W2280420890","https://openalex.org/W2292862470","https://openalex.org/W2466670129"],"related_works":["https://openalex.org/W1968965685","https://openalex.org/W2012792772","https://openalex.org/W2356573839","https://openalex.org/W2009028679","https://openalex.org/W2357424838","https://openalex.org/W2356903262","https://openalex.org/W2327601824","https://openalex.org/W4237142086","https://openalex.org/W2161102362","https://openalex.org/W2106833984"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"a":[3,33],"fully":[4],"automatic":[5],"segmentation":[6],"system":[7,30,119],"for":[8,142],"whole-body":[9,75],"high-frequency":[10],"ultrasound":[11],"(HFU)":[12],"images":[13],"of":[14,35,42,99,138],"mouse":[15],"embryos":[16],"that":[17],"can":[18,120],"simultaneously":[19],"segment":[20,121],"the":[21,25,40,43,51,55,57,61,74,88,94,122,143],"body":[22,123],"contour":[23],"and":[24,60,132],"brain":[26],"ventricles":[27],"(BVs).":[28],"Our":[29],"first":[31],"locates":[32],"region":[34],"interest":[36],"(ROI),":[37],"which":[38],"covers":[39],"interior":[41],"uterus,":[44],"by":[45,87],"sub-surface":[46],"analysis.":[47],"Then,":[48],"it":[49],"segments":[50],"ROI":[52],"into":[53],"BVs,":[54],"body,":[56],"amniotic":[58],"fluid,":[59],"uterine":[62],"wall,":[63],"using":[64],"nested":[65],"graph":[66],"cut.":[67],"Simultaneously":[68],"multilevel":[69],"thresholding":[70],"is":[71],"applied":[72],"to":[73,77,92,113],"image":[76,148],"propose":[78],"candidate":[79,101],"BV":[80,95,111,116],"components.":[81,117],"These":[82],"candidates":[83],"are":[84,103],"further":[85],"truncated":[86],"embryo":[89],"mask":[90],"(body+BVs)":[91],"refine":[93],"candidates.":[96],"Finally,":[97],"subsets":[98],"all":[100],"BVs":[102,144],"compared":[104],"with":[105],"pre-trained":[106],"spring":[107],"models":[108],"describing":[109],"valid":[110],"structures,":[112],"identify":[114],"true":[115],"The":[118],"accurately":[124],"in":[125],"most":[126],"cases":[127],"based":[128],"on":[129,145],"visual":[130],"inspection,":[131],"achieves":[133],"average":[134],"Dice":[135],"similarity":[136],"coefficient":[137],"0.8924":[139],"\u00b1":[140],"0.043":[141],"36":[146],"HFU":[147],"volumes.":[149]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
