{"id":"https://openalex.org/W2676733860","doi":"https://doi.org/10.1109/isbi.2017.7950720","title":"Elastic registration of high-resolution 3D PLI data of the human brain","display_name":"Elastic registration of high-resolution 3D PLI data of the human brain","publication_year":2017,"publication_date":"2017-04-01","ids":{"openalex":"https://openalex.org/W2676733860","doi":"https://doi.org/10.1109/isbi.2017.7950720","mag":"2676733860"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2017.7950720","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2017.7950720","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080765299","display_name":"Sharib Ali","orcid":"https://orcid.org/0000-0003-1313-3542"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"S. Ali","raw_affiliation_strings":["Dept. of Bioinformatics and Functional Genomics, University of Heidelberg and German Cancer Research Center (DKFZ), Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Bioinformatics and Functional Genomics, University of Heidelberg and German Cancer Research Center (DKFZ), Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065703260","display_name":"Karl Rohr","orcid":"https://orcid.org/0000-0001-7673-0999"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"K. Rohr","raw_affiliation_strings":["Dept. of Bioinformatics and Functional Genomics, University of Heidelberg and German Cancer Research Center (DKFZ), Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Bioinformatics and Functional Genomics, University of Heidelberg and German Cancer Research Center (DKFZ), Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022945512","display_name":"Markus Axer","orcid":"https://orcid.org/0000-0001-5871-9331"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"M. Axer","raw_affiliation_strings":["Institute of Neuroscience and Medicine1, Research Centre J\u00fclich, J\u00fclich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Neuroscience and Medicine1, Research Centre J\u00fclich, J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":null,"display_name":"D. Grassel","orcid":null},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"D. Grassel","raw_affiliation_strings":["Forschungszentrum Julich GmbH, Julich, Nordrhein-Westfalen, DE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Forschungszentrum Julich GmbH, Julich, Nordrhein-Westfalen, DE","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066192222","display_name":"Philipp Schl\u00f6mer","orcid":null},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"P. Schlomer","raw_affiliation_strings":["Forschungszentrum Julich GmbH, Julich, Nordrhein-Westfalen, DE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Forschungszentrum Julich GmbH, Julich, Nordrhein-Westfalen, DE","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009333521","display_name":"Katrin Amunts","orcid":"https://orcid.org/0000-0001-5828-0867"},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"K. Amunts","raw_affiliation_strings":["Institute of Neuroscience and Medicine1, Research Centre J\u00fclich, J\u00fclich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Neuroscience and Medicine1, Research Centre J\u00fclich, J\u00fclich, Germany","institution_ids":["https://openalex.org/I171892758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044191947","display_name":"Roland Eils","orcid":"https://orcid.org/0000-0002-0034-4036"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"R. Eils","raw_affiliation_strings":["Dept. of Bioinformatics and Functional Genomics, University of Heidelberg and German Cancer Research Center (DKFZ), Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. of Bioinformatics and Functional Genomics, University of Heidelberg and German Cancer Research Center (DKFZ), Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038055772","display_name":"Stefan W\u00f6rz","orcid":null},"institutions":[{"id":"https://openalex.org/I85384741","display_name":"Heidelberg University","ror":"https://ror.org/04rcqnp59","country_code":"US","type":"education","lineage":["https://openalex.org/I85384741"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Worz","raw_affiliation_strings":["Ruprecht Karls Universitat Heidelberg, Heidelberg, Baden-W\u00c3\u00bcrttemberg, DE","Ruprecht Karls Universitat Heidelberg, Heidelberg, Baden-W\u00fcrttemberg, DE"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ruprecht Karls Universitat Heidelberg, Heidelberg, Baden-W\u00c3\u00bcrttemberg, DE","institution_ids":["https://openalex.org/I85384741"]},{"raw_affiliation_string":"Ruprecht Karls Universitat Heidelberg, Heidelberg, Baden-W\u00fcrttemberg, DE","institution_ids":["https://openalex.org/I85384741"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.696397066116333},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6711304783821106},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.66522216796875},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6389586925506592},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.63311767578125},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6266796588897705},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5837693214416504},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5799241662025452},{"id":"https://openalex.org/keywords/resolution","display_name":"Resolution (logic)","score":0.47973790764808655},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.44324997067451477},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.43389058113098145},{"id":"https://openalex.org/keywords/image-resolution","display_name":"Image resolution","score":0.41302716732025146},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.18161731958389282}],"concepts":[{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.696397066116333},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6711304783821106},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.66522216796875},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6389586925506592},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.63311767578125},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6266796588897705},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5837693214416504},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5799241662025452},{"id":"https://openalex.org/C138268822","wikidata":"https://www.wikidata.org/wiki/Q1051925","display_name":"Resolution (logic)","level":2,"score":0.47973790764808655},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.44324997067451477},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.43389058113098145},{"id":"https://openalex.org/C205372480","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"Image resolution","level":2,"score":0.41302716732025146},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.18161731958389282},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2017.7950720","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2017.7950720","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6000000238418579,"display_name":"Peace, Justice and strong institutions","id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1180317585","https://openalex.org/W1480589934","https://openalex.org/W1585838142","https://openalex.org/W1602891001","https://openalex.org/W1964692336","https://openalex.org/W1973468478","https://openalex.org/W2000619457","https://openalex.org/W2031703351","https://openalex.org/W2032705742","https://openalex.org/W2037192432","https://openalex.org/W2050776270","https://openalex.org/W2074011271","https://openalex.org/W2082647352","https://openalex.org/W2087070363","https://openalex.org/W2103792409","https://openalex.org/W2131938193","https://openalex.org/W2133059825","https://openalex.org/W2261869528","https://openalex.org/W2345435404"],"related_works":["https://openalex.org/W2327340211","https://openalex.org/W2027542625","https://openalex.org/W4292199793","https://openalex.org/W2282195379","https://openalex.org/W2295388821","https://openalex.org/W2102312026","https://openalex.org/W4295532600","https://openalex.org/W2885663991","https://openalex.org/W2071433170","https://openalex.org/W2063823869"],"abstract_inverted_index":{"We":[0,78,103],"introduce":[1],"a":[2,37,46,55,71,75,93],"new":[3],"approach":[4,83],"for":[5,60,89,108],"the":[6,22],"elastic":[7,63],"registration":[8,27,58,64],"of":[9,18,21,28,31,49,65,92],"high-resolution":[10,66],"3D":[11,32,67],"polarized":[12],"light":[13],"imaging":[14],"(3D":[15],"PLI)":[16],"data":[17],"histological":[19],"sections":[20,91],"human":[23,94],"brain.":[24],"For":[25],"accurate":[26],"different":[29],"types":[30],"PLI":[33,68],"modalities,":[34],"we":[35,53],"propose":[36],"novel":[38],"intensity":[39],"similarity":[40],"measure":[41],"that":[42],"is":[43],"based":[44],"on":[45],"least-squares":[47],"formulation":[48],"normalized":[50],"cross-correlation.":[51],"Moreover,":[52],"present":[54,105],"fully":[56],"automatic":[57],"pipeline":[59],"rigid":[61],"and":[62,96],"images":[69],"with":[70,100],"blockface":[72],"reference":[73],"including":[74],"preprocessing":[76],"step.":[77],"have":[79],"successfully":[80],"evaluated":[81],"our":[82],"using":[84],"manually":[85],"obtained":[86],"ground":[87],"truth":[88],"five":[90],"brain":[95,110],"experimentally":[97],"compared":[98],"it":[99],"previous":[101],"approaches.":[102],"also":[104],"experimental":[106],"results":[107],"60":[109],"sections.":[111]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":6}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
