{"id":"https://openalex.org/W2427974100","doi":"https://doi.org/10.1109/isbi.2016.7493460","title":"Joint 3D alignment-reconstruction multi-scale approach for cryo electron tomography","display_name":"Joint 3D alignment-reconstruction multi-scale approach for cryo electron tomography","publication_year":2016,"publication_date":"2016-04-01","ids":{"openalex":"https://openalex.org/W2427974100","doi":"https://doi.org/10.1109/isbi.2016.7493460","mag":"2427974100"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2016.7493460","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2016.7493460","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-01318729/document","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006523144","display_name":"Hmida Rojbani","orcid":null},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR","TN"],"is_corresponding":true,"raw_author_name":"Hmida Rojbani","raw_affiliation_strings":["CNRS ICube, University of Strasbourg, Illkirch, France","University of Tunis EIManar, Tunis, Tunisia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS ICube, University of Strasbourg, Illkirch, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"University of Tunis EIManar, Tunis, Tunisia","institution_ids":["https://openalex.org/I108714496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030303318","display_name":"\u00c9tienne Baudrier","orcid":"https://orcid.org/0000-0002-2038-9434"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]},{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]}],"countries":["FR","TN"],"is_corresponding":false,"raw_author_name":"Etienne Baudrier","raw_affiliation_strings":["CNRS ICube, University of Strasbourg, Illkirch, France","University of Tunis EIManar, Tunis, Tunisia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS ICube, University of Strasbourg, Illkirch, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"University of Tunis EIManar, Tunis, Tunisia","institution_ids":["https://openalex.org/I108714496"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086489846","display_name":"Beno\u00eet Naegel","orcid":"https://orcid.org/0000-0002-7695-1473"},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benoit Naegel","raw_affiliation_strings":["CNRS ICube, University of Strasbourg, Illkirch, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS ICube, University of Strasbourg, Illkirch, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084845975","display_name":"Lo\u00efc Mazo","orcid":"https://orcid.org/0000-0001-7937-781X"},"institutions":[{"id":"https://openalex.org/I68947357","display_name":"Universit\u00e9 de Strasbourg","ror":"https://ror.org/00pg6eq24","country_code":"FR","type":"education","lineage":["https://openalex.org/I68947357"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Loic Mazo","raw_affiliation_strings":["CNRS ICube, University of Strasbourg, Illkirch, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS ICube, University of Strasbourg, Illkirch, France","institution_ids":["https://openalex.org/I68947357","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113660982","display_name":"Atef Hamouda","orcid":null},"institutions":[{"id":"https://openalex.org/I108714496","display_name":"Tunis University","ror":"https://ror.org/02q1spa57","country_code":"TN","type":"education","lineage":["https://openalex.org/I108714496"]}],"countries":["TN"],"is_corresponding":false,"raw_author_name":"Atef Hamouda","raw_affiliation_strings":["University of Tunis EIManar, Tunis, Tunisia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Tunis EIManar, Tunis, Tunisia","institution_ids":["https://openalex.org/I108714496"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5006523144"],"corresponding_institution_ids":["https://openalex.org/I108714496","https://openalex.org/I1294671590","https://openalex.org/I68947357"],"apc_list":null,"apc_paid":null,"fwci":0.6673,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.9202423,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1109","last_page":"1113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12039","display_name":"Electron and X-Ray Spectroscopy Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/2508","display_name":"Surfaces, Coatings and Films"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11183","display_name":"Advanced X-ray Imaging Techniques","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/3108","display_name":"Radiation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.6972269415855408},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.6573822498321533},{"id":"https://openalex.org/keywords/transformation","display_name":"Transformation (genetics)","score":0.6459061503410339},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6353293657302856},{"id":"https://openalex.org/keywords/electron-tomography","display_name":"Electron tomography","score":0.6128990054130554},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5907483100891113},{"id":"https://openalex.org/keywords/3d-reconstruction","display_name":"3D reconstruction","score":0.5704953670501709},{"id":"https://openalex.org/keywords/conjugate-gradient-method","display_name":"Conjugate gradient method","score":0.5286569595336914},{"id":"https://openalex.org/keywords/iterative-reconstruction","display_name":"Iterative reconstruction","score":0.5116096138954163},{"id":"https://openalex.org/keywords/tomography","display_name":"Tomography","score":0.4997844696044922},{"id":"https://openalex.org/keywords/rotation","display_name":"Rotation (mathematics)","score":0.48230624198913574},{"id":"https://openalex.org/keywords/tilt","display_name":"Tilt (camera)","score":0.4730322062969208},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.44669175148010254},{"id":"https://openalex.org/keywords/geometric-transformation","display_name":"Geometric transformation","score":0.43548065423965454},{"id":"https://openalex.org/keywords/rigid-transformation","display_name":"Rigid transformation","score":0.42303597927093506},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.24802640080451965},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23948118090629578},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.2053660750389099},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.20522570610046387},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.15381136536598206},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1178320050239563},{"id":"https://openalex.org/keywords/transmission-electron-microscopy","display_name":"Transmission electron microscopy","score":0.10478469729423523},{"id":"https://openalex.org/keywords/scanning-transmission-electron-microscopy","display_name":"Scanning transmission electron microscopy","score":0.09234693646430969}],"concepts":[{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.6972269415855408},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.6573822498321533},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.6459061503410339},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6353293657302856},{"id":"https://openalex.org/C75806775","wikidata":"https://www.wikidata.org/wiki/Q5358194","display_name":"Electron tomography","level":4,"score":0.6128990054130554},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5907483100891113},{"id":"https://openalex.org/C109950114","wikidata":"https://www.wikidata.org/wiki/Q4464732","display_name":"3D reconstruction","level":2,"score":0.5704953670501709},{"id":"https://openalex.org/C81184566","wikidata":"https://www.wikidata.org/wiki/Q1191895","display_name":"Conjugate gradient method","level":2,"score":0.5286569595336914},{"id":"https://openalex.org/C141379421","wikidata":"https://www.wikidata.org/wiki/Q6094427","display_name":"Iterative reconstruction","level":2,"score":0.5116096138954163},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.4997844696044922},{"id":"https://openalex.org/C74050887","wikidata":"https://www.wikidata.org/wiki/Q848368","display_name":"Rotation (mathematics)","level":2,"score":0.48230624198913574},{"id":"https://openalex.org/C2779844322","wikidata":"https://www.wikidata.org/wiki/Q2919140","display_name":"Tilt (camera)","level":2,"score":0.4730322062969208},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.44669175148010254},{"id":"https://openalex.org/C56435381","wikidata":"https://www.wikidata.org/wiki/Q1196371","display_name":"Geometric transformation","level":3,"score":0.43548065423965454},{"id":"https://openalex.org/C126795593","wikidata":"https://www.wikidata.org/wiki/Q7333813","display_name":"Rigid transformation","level":2,"score":0.42303597927093506},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.24802640080451965},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23948118090629578},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2053660750389099},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.20522570610046387},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.15381136536598206},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1178320050239563},{"id":"https://openalex.org/C146088050","wikidata":"https://www.wikidata.org/wiki/Q744818","display_name":"Transmission electron microscopy","level":2,"score":0.10478469729423523},{"id":"https://openalex.org/C193016168","wikidata":"https://www.wikidata.org/wiki/Q874835","display_name":"Scanning transmission electron microscopy","level":3,"score":0.09234693646430969},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2016.7493460","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2016.7493460","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-01318729v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01318729","pdf_url":"https://hal.science/hal-01318729/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://biomedicalimaging.org/2016/","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-01318729v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01318729","pdf_url":"https://hal.science/hal-01318729/document","source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://biomedicalimaging.org/2016/","raw_type":"Conference papers"},"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11","score":0.6899999976158142}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2427974100.pdf","grobid_xml":"https://content.openalex.org/works/W2427974100.grobid-xml"},"referenced_works_count":26,"referenced_works":["https://openalex.org/W164563170","https://openalex.org/W1506774439","https://openalex.org/W1594672787","https://openalex.org/W1966179826","https://openalex.org/W1972265036","https://openalex.org/W1990919278","https://openalex.org/W1996422692","https://openalex.org/W1999200217","https://openalex.org/W2016309987","https://openalex.org/W2027306662","https://openalex.org/W2056423338","https://openalex.org/W2056713455","https://openalex.org/W2056823255","https://openalex.org/W2068454934","https://openalex.org/W2076703865","https://openalex.org/W2091549324","https://openalex.org/W2117274978","https://openalex.org/W2147388225","https://openalex.org/W2156875677","https://openalex.org/W2166865345","https://openalex.org/W2343213154","https://openalex.org/W2491289633","https://openalex.org/W2607928667","https://openalex.org/W3205118173","https://openalex.org/W4300448178","https://openalex.org/W6997311084"],"related_works":["https://openalex.org/W2049631777","https://openalex.org/W4226373316","https://openalex.org/W4385714405","https://openalex.org/W2014035569","https://openalex.org/W4328007191","https://openalex.org/W4221149978","https://openalex.org/W4388739232","https://openalex.org/W4294431986","https://openalex.org/W2376089081","https://openalex.org/W1669293561"],"abstract_inverted_index":{"3D":[0,61,95,108],"volume":[1],"reconstruction":[2],"in":[3,56,66],"cryo-electron":[4],"tomography":[5],"is":[6,24,49],"possible":[7],"by":[8],"using":[9],"Transmission":[10],"Electron":[11],"Microscope":[12],"(TEM)":[13],"images":[14,23,100],"from":[15],"different":[16],"tilt":[17,71],"angles.":[18],"The":[19],"misalignment":[20],"of":[21,26,32,89,110,122],"these":[22],"one":[25],"the":[27,30,33,52,57,67,94,98,102,107,120],"limits":[28],"to":[29,41,50,104],"quality":[31],"reconstructed":[34,96],"object.":[35],"There":[36],"are":[37],"many":[38],"alignment":[39],"techniques":[40],"deal":[42],"with":[43,101],"this":[44,75],"problem.":[45],"Their":[46],"common":[47],"feature":[48],"correct":[51],"2D":[53],"geometric":[54,62,111,124],"transformation":[55,63,125],"projection":[58,99],"images.":[59],"Nevertheless,":[60],"can":[64],"occur":[65],"TEM":[68],"acquisition":[69],"including":[70],"angular":[72],"uncertainty.":[73],"In":[74],"paper,":[76],"we":[77],"proposed":[78],"a":[79,85,90],"new":[80],"multi-scale":[81],"approach":[82],"based":[83],"on":[84,114],"Conjugate":[86],"Gradient":[87],"optimization":[88],"cost":[91],"function":[92],"between":[93],"and":[97,116],"purpose":[103],"find":[105],"all":[106],"parameters":[109],"transformation.":[112],"Tests":[113],"synthetic":[115],"real":[117],"data":[118],"prove":[119],"accuracy":[121],"our":[123],"estimation.":[126]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-05-07T13:39:58.223016","created_date":"2025-10-10T00:00:00"}
