{"id":"https://openalex.org/W2342561373","doi":"https://doi.org/10.1109/isbi.2016.7493442","title":"An approach for detection of glomeruli in multisite digital pathology","display_name":"An approach for detection of glomeruli in multisite digital pathology","publication_year":2016,"publication_date":"2016-04-01","ids":{"openalex":"https://openalex.org/W2342561373","doi":"https://doi.org/10.1109/isbi.2016.7493442","mag":"2342561373"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2016.7493442","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2016.7493442","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://orbi.uliege.be/handle/2268/193003","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004554075","display_name":"Rapha\u00ebl Mar\u00e9e","orcid":"https://orcid.org/0000-0002-9587-1954"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]},{"id":"https://openalex.org/I157674565","display_name":"University of Li\u00e8ge","ror":"https://ror.org/00afp2z80","country_code":"BE","type":"education","lineage":["https://openalex.org/I157674565"]}],"countries":["BE","FR"],"is_corresponding":false,"raw_author_name":"R. Maree","raw_affiliation_strings":["BioImage Analysis Unit, Institut Pasteur, Paris, France","University of Li\u00e8ge Systems, Modeling Montefiore Institute & GIGA-Research, Belgique"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioImage Analysis Unit, Institut Pasteur, Paris, France","institution_ids":["https://openalex.org/I157536573"]},{"raw_affiliation_string":"University of Li\u00e8ge Systems, Modeling Montefiore Institute & GIGA-Research, Belgique","institution_ids":["https://openalex.org/I157674565"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071910569","display_name":"St\u00e9phane Dallongeville","orcid":"https://orcid.org/0000-0002-2204-7083"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Dallongeville","raw_affiliation_strings":["BioImage Analysis Unit, Institut Pasteur, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioImage Analysis Unit, Institut Pasteur, Paris, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003562216","display_name":"Jean\u2010Christophe Olivo\u2010Mar\u00edn","orcid":"https://orcid.org/0000-0001-6796-0696"},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J.-C. Olivo-Marin","raw_affiliation_strings":["BioImage Analysis Unit, Institut Pasteur, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioImage Analysis Unit, Institut Pasteur, Paris, France","institution_ids":["https://openalex.org/I157536573"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112992372","display_name":"Vannary Meas\u2010Yedid","orcid":null},"institutions":[{"id":"https://openalex.org/I157536573","display_name":"Institut Pasteur","ror":"https://ror.org/0495fxg12","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I157536573"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"V Meas-Yedid","raw_affiliation_strings":["BioImage Analysis Unit, Institut Pasteur, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BioImage Analysis Unit, Institut Pasteur, Paris, France","institution_ids":["https://openalex.org/I157536573"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1033","last_page":"1036"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12549","display_name":"Image and Object Detection Techniques","score":0.9833999872207642,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8558546304702759},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7629058361053467},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.6964490413665771},{"id":"https://openalex.org/keywords/informatics","display_name":"Informatics","score":0.49903345108032227},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.47605177760124207},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3871299624443054},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3608666658401489},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.09904491901397705},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07044732570648193}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8558546304702759},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7629058361053467},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.6964490413665771},{"id":"https://openalex.org/C191630685","wikidata":"https://www.wikidata.org/wiki/Q4027615","display_name":"Informatics","level":2,"score":0.49903345108032227},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.47605177760124207},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3871299624443054},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3608666658401489},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.09904491901397705},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07044732570648193},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/isbi.2016.7493442","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2016.7493442","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:pasteur-03721670v1","is_oa":false,"landing_page_url":"https://pasteur.hal.science/pasteur-03721670","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016), Apr 2016, Prague, Czech Republic. pp.1033-1036, &#x27E8;10.1109/ISBI.2016.7493442&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:orbi.ulg.ac.be:2268/193003","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/193003","pdf_url":null,"source":{"id":"https://openalex.org/S4306400651","display_name":"Open Repository and Bibliography (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings International Symposium on Biomedical Imaging, 4 (2016); IEEE Symposium on Biomedical Imaging (ISBI), Prague, Czechia [CZ], from 13-04-2016 to 16-04-2016","raw_type":"http://purl.org/coar/resource_type/c_5794"}],"best_oa_location":{"id":"pmh:oai:orbi.ulg.ac.be:2268/193003","is_oa":true,"landing_page_url":"https://orbi.uliege.be/handle/2268/193003","pdf_url":null,"source":{"id":"https://openalex.org/S4306400651","display_name":"Open Repository and Bibliography (University of Li\u00e8ge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I157674565","host_organization_name":"University of Li\u00e8ge","host_organization_lineage":["https://openalex.org/I157674565"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proceedings International Symposium on Biomedical Imaging, 4 (2016); IEEE Symposium on Biomedical Imaging (ISBI), Prague, Czechia [CZ], from 13-04-2016 to 16-04-2016","raw_type":"http://purl.org/coar/resource_type/c_5794"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1972552638","https://openalex.org/W1990981641","https://openalex.org/W2037947871","https://openalex.org/W2040532343","https://openalex.org/W2079611359","https://openalex.org/W2081578499","https://openalex.org/W2103828424","https://openalex.org/W2112028161","https://openalex.org/W2128239057","https://openalex.org/W2129112648","https://openalex.org/W2132162500","https://openalex.org/W2140427427","https://openalex.org/W2163605009","https://openalex.org/W2234666690","https://openalex.org/W2244666679","https://openalex.org/W6648047206","https://openalex.org/W6660437278","https://openalex.org/W6684191040"],"related_works":["https://openalex.org/W1981780420","https://openalex.org/W2182707996","https://openalex.org/W45233828","https://openalex.org/W2964988449","https://openalex.org/W188202134","https://openalex.org/W4317866621","https://openalex.org/W2553136576","https://openalex.org/W2554159640","https://openalex.org/W4391166748","https://openalex.org/W3162476954"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2],"novel":[3],"bioimage":[4],"informatics":[5],"workflow":[6,31],"that":[7],"combines":[8],"Icy":[9],"and":[10,13,35],"Cytomine":[11],"software":[12],"their":[14],"algorithms":[15],"to":[16],"enable":[17],"large-scale":[18],"analysis":[19],"of":[20,44,48],"digital":[21],"slides":[22],"from":[23],"multiple":[24],"sites.":[25],"In":[26],"particular,":[27],"we":[28],"apply":[29],"this":[30],"on":[32],"renal":[33],"biopsies":[34],"evaluate":[36],"empirically":[37],"our":[38],"approach":[39],"for":[40],"the":[41],"automatic":[42],"detection":[43],"glomeruli":[45],"in":[46],"hundreds":[47],"tissue":[49],"sections.":[50]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":9},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
