{"id":"https://openalex.org/W2441173492","doi":"https://doi.org/10.1109/isbi.2016.7493291","title":"USER-friendly image-based segmentation and analysis of chromosomes","display_name":"USER-friendly image-based segmentation and analysis of chromosomes","publication_year":2016,"publication_date":"2016-04-01","ids":{"openalex":"https://openalex.org/W2441173492","doi":"https://doi.org/10.1109/isbi.2016.7493291","mag":"2441173492"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2016.7493291","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2016.7493291","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/220949","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034638851","display_name":"Virginie Uhlmann","orcid":"https://orcid.org/0000-0002-2859-9241"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]},{"id":"https://openalex.org/I4210133377","display_name":"Centre d'Imagerie BioMedicale","ror":"https://ror.org/03fw2bn12","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210133377"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"V Uhlmann","raw_affiliation_strings":["Biomedical Imaging Group, EPFL, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Imaging Group, EPFL, Lausanne, Switzerland","institution_ids":["https://openalex.org/I4210133377","https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015631143","display_name":"Ricard Delgado-Gonzalo","orcid":"https://orcid.org/0000-0002-7183-6257"},"institutions":[{"id":"https://openalex.org/I4210133377","display_name":"Centre d'Imagerie BioMedicale","ror":"https://ror.org/03fw2bn12","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210133377"]},{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"R. Delgado-Gonzalo","raw_affiliation_strings":["Biomedical Imaging Group, EPFL, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Imaging Group, EPFL, Lausanne, Switzerland","institution_ids":["https://openalex.org/I4210133377","https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027830035","display_name":"Micha\u00ebl Unser","orcid":"https://orcid.org/0000-0003-1248-2513"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]},{"id":"https://openalex.org/I4210133377","display_name":"Centre d'Imagerie BioMedicale","ror":"https://ror.org/03fw2bn12","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210133377"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"M. Unser","raw_affiliation_strings":["Biomedical Imaging Group, EPFL, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Biomedical Imaging Group, EPFL, Lausanne, Switzerland","institution_ids":["https://openalex.org/I4210133377","https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108105492","display_name":"P. O. Michel","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"P. O. Michel","raw_affiliation_strings":["EPFL, Cellular Biotechnology Laboratory, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"EPFL, Cellular Biotechnology Laboratory, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029282348","display_name":"Lucia Baldi","orcid":"https://orcid.org/0000-0001-5550-9435"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"L. Baldi","raw_affiliation_strings":["EPFL, Cellular Biotechnology Laboratory, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"EPFL, Cellular Biotechnology Laboratory, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101438238","display_name":"Florian \u039c. Wurm","orcid":"https://orcid.org/0000-0003-1114-4520"},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"F. M. Wurm","raw_affiliation_strings":["EPFL, Cellular Biotechnology Laboratory, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"EPFL, Cellular Biotechnology Laboratory, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5034638851"],"corresponding_institution_ids":["https://openalex.org/I4210133377","https://openalex.org/I5124864"],"apc_list":null,"apc_paid":null,"fwci":0.3004,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.73354722,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"395","last_page":"398"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9764000177383423,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7289584279060364},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6416453719139099},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5920183658599854},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5491632223129272},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.529991090297699},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5237122178077698},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.5216175317764282},{"id":"https://openalex.org/keywords/chromosome","display_name":"Chromosome","score":0.504817545413971},{"id":"https://openalex.org/keywords/user-friendly","display_name":"User Friendly","score":0.5009233951568604},{"id":"https://openalex.org/keywords/sort","display_name":"sort","score":0.47193190455436707},{"id":"https://openalex.org/keywords/graphical-user-interface","display_name":"Graphical user interface","score":0.45298629999160767},{"id":"https://openalex.org/keywords/centromere","display_name":"Centromere","score":0.4200579524040222},{"id":"https://openalex.org/keywords/parametric-statistics","display_name":"Parametric statistics","score":0.414840966463089},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3968874216079712},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.13443675637245178},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12301528453826904},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09992781281471252},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08302575349807739}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7289584279060364},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6416453719139099},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5920183658599854},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5491632223129272},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.529991090297699},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5237122178077698},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.5216175317764282},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.504817545413971},{"id":"https://openalex.org/C61437842","wikidata":"https://www.wikidata.org/wiki/Q281291","display_name":"User Friendly","level":2,"score":0.5009233951568604},{"id":"https://openalex.org/C88548561","wikidata":"https://www.wikidata.org/wiki/Q347599","display_name":"sort","level":2,"score":0.47193190455436707},{"id":"https://openalex.org/C37789001","wikidata":"https://www.wikidata.org/wiki/Q782543","display_name":"Graphical user interface","level":2,"score":0.45298629999160767},{"id":"https://openalex.org/C63491729","wikidata":"https://www.wikidata.org/wiki/Q14762596","display_name":"Centromere","level":4,"score":0.4200579524040222},{"id":"https://openalex.org/C117251300","wikidata":"https://www.wikidata.org/wiki/Q1849855","display_name":"Parametric statistics","level":2,"score":0.414840966463089},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3968874216079712},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.13443675637245178},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12301528453826904},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09992781281471252},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08302575349807739},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2016.7493291","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2016.7493291","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:infoscience.epfl.ch:220949","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/220949","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:infoscience.epfl.ch:220949","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/220949","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1250623024","display_name":null,"funder_award_id":"200020-144355","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G1441312571","display_name":null,"funder_award_id":"00020","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G1987499564","display_name":null,"funder_award_id":"200020-121763","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G3046754738","display_name":"Spline methods for the continuous/discrete processing of images","funder_award_id":"144355","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G4836148144","display_name":null,"funder_award_id":"20002","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G5599649393","display_name":null,"funder_award_id":"200020","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G628552264","display_name":null,"funder_award_id":"200020","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G848032724","display_name":null,"funder_award_id":"Science","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8555150823","display_name":"Spline methods for the continuous/discrete processing of images","funder_award_id":"121763","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1971784203","https://openalex.org/W1982662510","https://openalex.org/W1987577377","https://openalex.org/W1996342882","https://openalex.org/W2020669495","https://openalex.org/W2033733256","https://openalex.org/W2075621462","https://openalex.org/W2105618568","https://openalex.org/W2128266535","https://openalex.org/W2129042353","https://openalex.org/W2138825607","https://openalex.org/W2158642611","https://openalex.org/W2294282334","https://openalex.org/W2319660501","https://openalex.org/W2432517183"],"related_works":["https://openalex.org/W2170060741","https://openalex.org/W4401541830","https://openalex.org/W2042820267","https://openalex.org/W2505786821","https://openalex.org/W2784774366","https://openalex.org/W1973102274","https://openalex.org/W81600937","https://openalex.org/W2289002847","https://openalex.org/W2357824555","https://openalex.org/W2166810212"],"abstract_inverted_index":{"We":[0],"designed":[1,93],"two":[2,80],"efficient":[3],"and":[4,10,39,55,61,76],"user-friendly":[5,95],"tools":[6],"for":[7,97],"the":[8,34,42,63,67,70,98],"segmentation":[9,28],"analysis":[11,51],"of":[12,36,44,66,86],"images":[13],"containing":[14],"chromosomes":[15],"or,":[16],"more":[17],"generally,":[18],"rod-shaped":[19],"elements":[20],"that":[21],"are":[22],"spread":[23],"on":[24,83],"microscopic":[25],"slides.":[26],"The":[27,50,79],"tool":[29,52],"allows":[30,56],"to":[31,40,57,69],"automatically":[32],"extract":[33,58],"profile":[35],"each":[37],"chromosome":[38,71],"sort":[41],"collection":[43],"profiles":[45],"in":[46,73],"a":[47,74],"karyotype":[48],"image.":[49],"is":[53],"interactive":[54],"quantitative":[59],"measurements":[60],"annotate":[62],"relative":[64],"position":[65],"centromere":[68],"extremities":[72],"fast":[75],"reproducible":[77],"way.":[78],"methods":[81],"rely":[82],"custom":[84],"variants":[85],"parametric":[87],"active":[88],"contours.":[89],"Both":[90],"have":[91],"been":[92],"as":[94],"plug-ins":[96],"open-source":[99],"software":[100],"ImageJ.":[101]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
