{"id":"https://openalex.org/W1543194636","doi":"https://doi.org/10.1109/isbi.2015.7163874","title":"Intensity-based point-spread-function-aware registration for multi-view applications in optical microscopy","display_name":"Intensity-based point-spread-function-aware registration for multi-view applications in optical microscopy","publication_year":2015,"publication_date":"2015-04-01","ids":{"openalex":"https://openalex.org/W1543194636","doi":"https://doi.org/10.1109/isbi.2015.7163874","mag":"1543194636"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2015.7163874","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2015.7163874","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/205156","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064161509","display_name":"Nikhil Chacko","orcid":null},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nikhil Chacko","raw_affiliation_strings":["Electrical and Computer Engineering, University of California, Santa Barbara, CA, U.S.A"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of California, Santa Barbara, CA, U.S.A","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034543851","display_name":"Kevin G. Chan","orcid":"https://orcid.org/0000-0002-2400-5258"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kevin G. Chan","raw_affiliation_strings":["Electrical and Computer Engineering, University of California, Santa Barbara, CA, U.S.A"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of California, Santa Barbara, CA, U.S.A","institution_ids":["https://openalex.org/I154570441"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100429795","display_name":"Michael Liebling","orcid":"https://orcid.org/0000-0001-7608-2733"},"institutions":[{"id":"https://openalex.org/I154570441","display_name":"University of California, Santa Barbara","ror":"https://ror.org/02t274463","country_code":"US","type":"education","lineage":["https://openalex.org/I154570441"]},{"id":"https://openalex.org/I7495430","display_name":"Idiap Research Institute","ror":"https://ror.org/05932h694","country_code":"CH","type":"facility","lineage":["https://openalex.org/I7495430"]}],"countries":["CH","US"],"is_corresponding":false,"raw_author_name":"Michael Liebling","raw_affiliation_strings":["Electrical and Computer Engineering, University of California, Santa Barbara, CA, U.S.A","Idiap Research Institute, Martigny, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Electrical and Computer Engineering, University of California, Santa Barbara, CA, U.S.A","institution_ids":["https://openalex.org/I154570441"]},{"raw_affiliation_string":"Idiap Research Institute, Martigny, Switzerland","institution_ids":["https://openalex.org/I7495430"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"322","issue":null,"first_page":"306","last_page":"309"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10531","display_name":"Advanced Vision and Imaging","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10531","display_name":"Advanced Vision and Imaging","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.6978663206100464},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.66938316822052},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6503169536590576},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5985161662101746},{"id":"https://openalex.org/keywords/point-spread-function","display_name":"Point spread function","score":0.5732620358467102},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.5577625036239624},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4986419677734375},{"id":"https://openalex.org/keywords/pyramid","display_name":"Pyramid (geometry)","score":0.4983513355255127},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.49543821811676025},{"id":"https://openalex.org/keywords/point","display_name":"Point (geometry)","score":0.45179271697998047},{"id":"https://openalex.org/keywords/intensity","display_name":"Intensity (physics)","score":0.4105326533317566},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.3158484995365143},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.21179866790771484},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.19759231805801392},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08282545208930969}],"concepts":[{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.6978663206100464},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.66938316822052},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6503169536590576},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5985161662101746},{"id":"https://openalex.org/C69179731","wikidata":"https://www.wikidata.org/wiki/Q510427","display_name":"Point spread function","level":2,"score":0.5732620358467102},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.5577625036239624},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4986419677734375},{"id":"https://openalex.org/C142575187","wikidata":"https://www.wikidata.org/wiki/Q3358290","display_name":"Pyramid (geometry)","level":2,"score":0.4983513355255127},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.49543821811676025},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.45179271697998047},{"id":"https://openalex.org/C93038891","wikidata":"https://www.wikidata.org/wiki/Q1061524","display_name":"Intensity (physics)","level":2,"score":0.4105326533317566},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.3158484995365143},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.21179866790771484},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.19759231805801392},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08282545208930969},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2015.7163874","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2015.7163874","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:infoscience.epfl.ch:205156","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/205156","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:infoscience.epfl.ch:205156","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/205156","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1970414004","https://openalex.org/W1970920196","https://openalex.org/W1972541957","https://openalex.org/W1973747191","https://openalex.org/W1977700928","https://openalex.org/W2016029650","https://openalex.org/W2023701980","https://openalex.org/W2031312855","https://openalex.org/W2046084863","https://openalex.org/W2054823391","https://openalex.org/W2084136121","https://openalex.org/W2087070363","https://openalex.org/W2120280503","https://openalex.org/W2131938193","https://openalex.org/W2146404768","https://openalex.org/W3088156006","https://openalex.org/W6642807000"],"related_works":["https://openalex.org/W3135697610","https://openalex.org/W2085033728","https://openalex.org/W4285411112","https://openalex.org/W2171299904","https://openalex.org/W4249847449","https://openalex.org/W1647606319","https://openalex.org/W2922442631","https://openalex.org/W44395729","https://openalex.org/W4390494008","https://openalex.org/W2092492017"],"abstract_inverted_index":{"We":[0,56,113,134],"present":[1],"an":[2,18,106],"algorithm":[3,97,137],"to":[4,58,77],"spatially":[5],"register":[6],"two":[7],"volumetric":[8],"datasets":[9],"related":[10],"via":[11,115],"a":[12,145,150],"rigid-body":[13],"transform":[14],"and":[15,66],"degraded":[16],"by":[17,62,99,140],"anisotropic":[19,46],"point-spread-function":[20],"(PSF).":[21],"Registration":[22],"is":[23,120],"necessary,":[24],"for":[25,44,131],"example,":[26],"when":[27],"fusing":[28],"data":[29,68],"in":[30,53,75,138],"multi-view":[31,142],"microscopy.":[32],"Automatic":[33],"algorithms":[34],"that":[35,104,117,127],"only":[36],"rely":[37],"on":[38],"maximizing":[39],"pixel":[40],"similarity,":[41],"without":[42],"accounting":[43],"the":[45,64,73,83,93,110,124,132],"image":[47],"formation":[48],"process,":[49],"provide":[50],"poor":[51],"results":[52],"such":[54],"applications.":[55],"propose":[57],"solve":[59],"this":[60],"problem":[61],"re-blurring":[63],"reference":[65],"test":[67],"with":[69],"transformed":[70],"forms":[71],"of":[72,109,144],"PSF,":[74],"order":[76],"make":[78],"them":[79],"comparable,":[80],"before":[81],"minimizing":[82],"mean":[84],"squared":[85],"intensity":[86],"difference":[87],"between":[88],"them.":[89],"Our":[90],"approach":[91,126],"extends":[92],"pyramid-based":[94],"sub-pixel":[95],"registration":[96],"proposed":[98],"Th\u00e9venaz":[100],"et":[101],"al.,":[102],"1998,":[103],"employs":[105],"improved":[107],"form":[108],"Marquardt-Levenberg":[111],"algorithm.":[112],"show,":[114],"simulations,":[116],"our":[118,136],"method":[119],"more":[121],"accurate":[122],"than":[123],"conventional":[125],"does":[128],"not":[129],"account":[130],"PSF.":[133],"demonstrate":[135],"practice":[139],"registering":[141],"volumes":[143],"zebrafish":[146],"larva":[147],"acquired":[148],"using":[149],"wide-field":[151],"microscope.":[152]},"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}