{"id":"https://openalex.org/W2083213187","doi":"https://doi.org/10.1109/isbi.2014.6868001","title":"Automatic particle picking and multi-class classification in cryo-electron tomograms","display_name":"Automatic particle picking and multi-class classification in cryo-electron tomograms","publication_year":2014,"publication_date":"2014-04-01","ids":{"openalex":"https://openalex.org/W2083213187","doi":"https://doi.org/10.1109/isbi.2014.6868001","mag":"2083213187"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2014.6868001","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2014.6868001","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011889782","display_name":"Xuanli Chen","orcid":"https://orcid.org/0000-0003-0317-4623"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Xuanli Chen","raw_affiliation_strings":["Computer Aided Medical Procedures and Augmented Reality, Technical University Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Computer Aided Medical Procedures and Augmented Reality, Technical University Munich, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100334456","display_name":"Yuxiang Chen","orcid":"https://orcid.org/0000-0003-1972-9208"},"institutions":[{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Yuxiang Chen","raw_affiliation_strings":["Computer Aided Medical Procedures and Augmented Reality, Technical University Munich, Germany","Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany"],"affiliations":[{"raw_affiliation_string":"Computer Aided Medical Procedures and Augmented Reality, Technical University Munich, Germany","institution_ids":[]},{"raw_affiliation_string":"Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081245410","display_name":"Jan M. Schuller","orcid":"https://orcid.org/0000-0002-9121-1764"},"institutions":[{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Michael Schuller","raw_affiliation_strings":["Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany"],"affiliations":[{"raw_affiliation_string":"Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046896448","display_name":"Nassir Navab","orcid":"https://orcid.org/0000-0002-6032-5611"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nassir Navab","raw_affiliation_strings":["Computer Aided Medical Procedures and Augmented Reality, Technical University Munich, Germany"],"affiliations":[{"raw_affiliation_string":"Computer Aided Medical Procedures and Augmented Reality, Technical University Munich, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073848521","display_name":"Friedrich F\u00f6rster","orcid":"https://orcid.org/0000-0002-6044-2746"},"institutions":[{"id":"https://openalex.org/I4210150093","display_name":"Max Planck Institute of Biochemistry","ror":"https://ror.org/04py35477","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210150093"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Friedrich Forster","raw_affiliation_strings":["Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany"],"affiliations":[{"raw_affiliation_string":"Molecular Structural Biology, Max Planck Institute of Biochemistry, Martinsried, Germany","institution_ids":["https://openalex.org/I4210150093"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5011889782"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.9186,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.8860038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"838","last_page":"841"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6957338452339172},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6403765082359314},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.625535249710083},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.5309336185455322},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4810605049133301},{"id":"https://openalex.org/keywords/cryo-electron-tomography","display_name":"Cryo-electron tomography","score":0.4783053696155548},{"id":"https://openalex.org/keywords/electron-tomography","display_name":"Electron tomography","score":0.45461735129356384},{"id":"https://openalex.org/keywords/invariant","display_name":"Invariant (physics)","score":0.4459018111228943},{"id":"https://openalex.org/keywords/template-matching","display_name":"Template matching","score":0.425439715385437},{"id":"https://openalex.org/keywords/tomography","display_name":"Tomography","score":0.4013475179672241},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.376853346824646},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2095153033733368},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.14019685983657837},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.09888783097267151}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6957338452339172},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6403765082359314},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.625535249710083},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.5309336185455322},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4810605049133301},{"id":"https://openalex.org/C2777993257","wikidata":"https://www.wikidata.org/wiki/Q904576","display_name":"Cryo-electron tomography","level":3,"score":0.4783053696155548},{"id":"https://openalex.org/C75806775","wikidata":"https://www.wikidata.org/wiki/Q5358194","display_name":"Electron tomography","level":4,"score":0.45461735129356384},{"id":"https://openalex.org/C190470478","wikidata":"https://www.wikidata.org/wiki/Q2370229","display_name":"Invariant (physics)","level":2,"score":0.4459018111228943},{"id":"https://openalex.org/C158096908","wikidata":"https://www.wikidata.org/wiki/Q3983303","display_name":"Template matching","level":3,"score":0.425439715385437},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.4013475179672241},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.376853346824646},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2095153033733368},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.14019685983657837},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.09888783097267151},{"id":"https://openalex.org/C193016168","wikidata":"https://www.wikidata.org/wiki/Q874835","display_name":"Scanning transmission electron microscopy","level":3,"score":0.0},{"id":"https://openalex.org/C93877712","wikidata":"https://www.wikidata.org/wiki/Q132560","display_name":"Electron microscope","level":2,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2014.6868001","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2014.6868001","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:pure.mpg.de:item_2262565","is_oa":false,"landing_page_url":"http://hdl.handle.net/11858/00-001M-0000-002A-2172-8","pdf_url":null,"source":{"id":"https://openalex.org/S4306400654","display_name":"MPG.PuRe (Max Planck Society)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on. Vol. 1+2","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7200000286102295,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1529320607","https://openalex.org/W1673310716","https://openalex.org/W2003294049","https://openalex.org/W2005601437","https://openalex.org/W2014572457","https://openalex.org/W2049330043","https://openalex.org/W2096579040","https://openalex.org/W2123176293","https://openalex.org/W2126408091","https://openalex.org/W2128796372","https://openalex.org/W2150134853","https://openalex.org/W2164598857","https://openalex.org/W2911964244","https://openalex.org/W6631561827","https://openalex.org/W6637131181"],"related_works":["https://openalex.org/W4391807066","https://openalex.org/W2074590783","https://openalex.org/W2795257615","https://openalex.org/W1991282399","https://openalex.org/W2027708667","https://openalex.org/W1506774439","https://openalex.org/W4239598820","https://openalex.org/W2978863164","https://openalex.org/W63087067","https://openalex.org/W2916244962"],"abstract_inverted_index":{"Macromolecular":[0],"structure":[1],"determination":[2],"using":[3],"cryo-electron":[4,32],"tomography":[5],"requires":[6],"large":[7],"amount":[8],"of":[9,46,79,92,113],"subtomograms":[10],"depicting":[11],"the":[12],"same":[13],"molecule,":[14],"which":[15],"are":[16,88],"averaged.":[17],"In":[18],"this":[19],"paper,":[20],"we":[21,104],"propose":[22],"a":[23,47,62,74],"novel":[24,63],"automatic":[25],"particle":[26],"picking":[27,49],"and":[28,40,56,73,85,103,115],"classification":[29,76],"method":[30,44,94],"for":[31,111],"tomograms.":[33],"The":[34,42,90],"workflow":[35],"comprises":[36],"two":[37,80],"stages:":[38],"detection":[39,43,112],"classification.":[41],"consists":[45],"template-free":[48],"procedure":[50],"based":[51,101],"on":[52],"anisotropic":[53],"diffusion":[54],"filtering":[55],"connected":[57],"component":[58],"analysis.":[59],"For":[60],"classification,":[61],"3D":[64],"rotation":[65],"invariant":[66],"feature":[67],"descriptor":[68],"named":[69],"Sphere":[70],"Ring":[71],"Haar":[72],"hierarchical":[75],"algorithm":[77],"consisting":[78],"machine":[81],"learning":[82],"models":[83],"(DBSCAN":[84],"random":[86],"forest)":[87],"proposed.":[89],"performance":[91],"our":[93],"is":[95],"superior":[96],"compared":[97],"to":[98],"template":[99],"matching":[100],"methods":[102],"achieved":[105],"over":[106],"90%":[107],"true":[108],"positive":[109],"rates":[110],"proteasomes":[114],"ribosomes":[116],"in":[117],"experimental":[118],"data.":[119]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
