{"id":"https://openalex.org/W2006493427","doi":"https://doi.org/10.1109/isbi.2014.6867944","title":"A 3D model with shape prior information for biological structures reconstruction using multiple-angle total internal reflection fluorescence microscopy","display_name":"A 3D model with shape prior information for biological structures reconstruction using multiple-angle total internal reflection fluorescence microscopy","publication_year":2014,"publication_date":"2014-04-01","ids":{"openalex":"https://openalex.org/W2006493427","doi":"https://doi.org/10.1109/isbi.2014.6867944","mag":"2006493427"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2014.6867944","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2014.6867944","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082606466","display_name":"Emmanuel Soubies","orcid":"https://orcid.org/0000-0003-0571-6983"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emmanuel Soubies","raw_affiliation_strings":["Universit\u00e9 Nice Sophia Antipolis I3S, CNRS, France","Universit\u00e9 Nice Sophia Antipolis, I3S, CNRS, Sophia Antipolis, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis I3S, CNRS, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis, I3S, CNRS, Sophia Antipolis, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088603553","display_name":"Laure Blanc-F\u00e9raud","orcid":"https://orcid.org/0000-0002-9693-6924"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laure Blanc-Feraud","raw_affiliation_strings":["Universit\u00e9 Nice Sophia Antipolis I3S, CNRS, France","Universit\u00e9 Nice Sophia Antipolis, I3S, CNRS, Sophia Antipolis, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis I3S, CNRS, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis, I3S, CNRS, Sophia Antipolis, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038534132","display_name":"S\u00e9bastien Schaub","orcid":"https://orcid.org/0000-0002-9624-3271"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sebastien Schaub","raw_affiliation_strings":["Universit\u00e9 Nice Sophia Antipolis iBV, INSERM, Nice, France","Universit\u00e9 Nice Sophia Antipolis, iBV, CNRS, INSERM, Nice, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis iBV, INSERM, Nice, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I201841394"]},{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis, iBV, CNRS, INSERM, Nice, France","institution_ids":["https://openalex.org/I154526488","https://openalex.org/I201841394","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111971858","display_name":"Gilles Aubert","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I201841394","display_name":"Universit\u00e9 C\u00f4te d'Azur","ror":"https://ror.org/019tgvf94","country_code":"FR","type":"education","lineage":["https://openalex.org/I201841394"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gilles Aubert","raw_affiliation_strings":["Universit\u00e9 Nice Sophia Antipolis, CNRS, Nice, France","Universit\u00e9 Nice Sophia Antipolis, Laboratoire J.A. Dieudonn\u00e9, CNRS, Nice, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis, CNRS, Nice, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Universit\u00e9 Nice Sophia Antipolis, Laboratoire J.A. Dieudonn\u00e9, CNRS, Nice, France","institution_ids":["https://openalex.org/I201841394","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.3891,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.78582217,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"103","issue":null,"first_page":"608","last_page":"611"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11830","display_name":"Point processes and geometric inequalities","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2604","display_name":"Applied Mathematics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11830","display_name":"Point processes and geometric inequalities","score":0.989799976348877,"subfield":{"id":"https://openalex.org/subfields/2604","display_name":"Applied Mathematics"},"field":{"id":"https://openalex.org/fields/26","display_name":"Mathematics"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9879999756813049,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10996","display_name":"Computational Geometry and Mesh Generation","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/total-internal-reflection-fluorescence-microscope","display_name":"Total internal reflection fluorescence microscope","score":0.7481257319450378},{"id":"https://openalex.org/keywords/inverse-problem","display_name":"Inverse problem","score":0.6519978046417236},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.612749457359314},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5162903666496277},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5135279297828674},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.5041111707687378},{"id":"https://openalex.org/keywords/total-internal-reflection","display_name":"Total internal reflection","score":0.49196526408195496},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4563887119293213},{"id":"https://openalex.org/keywords/iterative-reconstruction","display_name":"Iterative reconstruction","score":0.4344812035560608},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.43004098534584045},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42137232422828674},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.41223275661468506},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.36785733699798584},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2748185098171234},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.24212601780891418},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.17711317539215088}],"concepts":[{"id":"https://openalex.org/C121381206","wikidata":"https://www.wikidata.org/wiki/Q902514","display_name":"Total internal reflection fluorescence microscope","level":3,"score":0.7481257319450378},{"id":"https://openalex.org/C135252773","wikidata":"https://www.wikidata.org/wiki/Q1567213","display_name":"Inverse problem","level":2,"score":0.6519978046417236},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.612749457359314},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5162903666496277},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5135279297828674},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.5041111707687378},{"id":"https://openalex.org/C170395517","wikidata":"https://www.wikidata.org/wiki/Q234943","display_name":"Total internal reflection","level":2,"score":0.49196526408195496},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4563887119293213},{"id":"https://openalex.org/C141379421","wikidata":"https://www.wikidata.org/wiki/Q6094427","display_name":"Iterative reconstruction","level":2,"score":0.4344812035560608},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.43004098534584045},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42137232422828674},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.41223275661468506},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.36785733699798584},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2748185098171234},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.24212601780891418},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.17711317539215088},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2014.6867944","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2014.6867944","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-00914998v1","is_oa":false,"landing_page_url":"https://inria.hal.science/hal-00914998","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBI - International Symposium on Biomedical Imaging, Apr 2014, Beijing, China. pp.608 - 611, ⟨10.1109/ISBI.2014.6867944⟩","raw_type":"Conference papers"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","score":0.7200000286102295,"id":"https://metadata.un.org/sdg/11"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1965598222","https://openalex.org/W2016235229","https://openalex.org/W2055926624","https://openalex.org/W2066597100","https://openalex.org/W2087810007","https://openalex.org/W2096963388","https://openalex.org/W2104624493","https://openalex.org/W2106706098","https://openalex.org/W2288750238","https://openalex.org/W2500608749","https://openalex.org/W2625544450","https://openalex.org/W4211085559"],"related_works":["https://openalex.org/W2756826893","https://openalex.org/W2523119813","https://openalex.org/W4292056011","https://openalex.org/W1988624629","https://openalex.org/W1564351816","https://openalex.org/W2998734029","https://openalex.org/W2166817900","https://openalex.org/W3203477181","https://openalex.org/W2014023680","https://openalex.org/W217424134"],"abstract_inverted_index":{"We":[0,47],"propose":[1,83],"a":[2,49,55,84,104,132],"new":[3],"model":[4,115],"for":[5],"the":[6,24,30,39,45,60,76,79,87,94,109,114,142,148,154],"reconstruction":[7,51],"of":[8,26,35,41,44,78,89,111,153],"biological":[9],"structures":[10,28,62],"using":[11,131],"Multiple-Angle":[12],"Total":[13],"Internal":[14],"Reflection":[15],"Fluorescence":[16],"Microscopy":[17],"(MA-TIRFM).":[18],"This":[19,123],"recent":[20],"microscopy":[21],"technique":[22],"allows":[23,138],"visualization":[25],"sub-cellular":[27],"around":[29],"plasma":[31],"membrane":[32],"which":[33,137],"is":[34,81,128],"fundamental":[36],"importance":[37],"in":[38,113,144],"comprehension":[40],"exchanges":[42],"mechanisms":[43],"cell.":[46],"present":[48],"3D":[50],"method":[52,85,156],"based":[53],"on":[54,59,159],"shape":[56],"prior":[57],"information":[58],"observed":[61],"and":[63,68,116,162],"robust":[64],"to":[65,75,82,120,146],"shot":[66],"noise":[67],"background":[69],"fluorescence.":[70],"A":[71],"novelty":[72],"with":[73],"respect":[74],"state":[77],"art":[80],"allowing":[86],"recovery":[88],"multiple":[90],"objects":[91,112,143],"aligned":[92],"along":[93],"axial":[95],"axis.":[96],"The":[97],"optimization":[98,126],"problem":[99,106,127],"can":[100],"be":[101,121],"formulated":[102],"as":[103],"minimization":[105],"where":[107],"both":[108],"number":[110],"their":[117],"parameters":[118],"have":[119],"estimated.":[122],"difficult":[124],"combinatorial":[125],"tackled":[129],"by":[130],"Marked":[133],"Point":[134],"Process":[135],"approach":[136],"modelling":[139],"interactions":[140],"between":[141],"order":[145],"regularize":[147],"inverse":[149],"problem.":[150],"Finally,":[151],"performances":[152],"proposed":[155],"are":[157],"evaluated":[158],"synthetic":[160],"data":[161],"real":[163],"data.":[164]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}