{"id":"https://openalex.org/W2059445375","doi":"https://doi.org/10.1109/isbi.2014.6867866","title":"Automated cell junction tracking with modified active contours guided by SIFT flow","display_name":"Automated cell junction tracking with modified active contours guided by SIFT flow","publication_year":2014,"publication_date":"2014-04-01","ids":{"openalex":"https://openalex.org/W2059445375","doi":"https://doi.org/10.1109/isbi.2014.6867866","mag":"2059445375"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2014.6867866","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2014.6867866","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/1273982","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017624817","display_name":"Chen-Yu Lee","orcid":"https://orcid.org/0000-0003-2807-176X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chen-Yu Lee","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of California at San Diego, CA, USA","Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA, 92093\u22120407, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California at San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA, 92093\u22120407, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087356502","display_name":"Sukryool Kang","orcid":null},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sukryool Kang","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of California at San Diego, CA, USA","Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA, 92093\u22120407, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California at San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA, 92093\u22120407, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041470900","display_name":"Andrew Chisholm","orcid":"https://orcid.org/0000-0001-5091-0537"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew D. Chisholm","raw_affiliation_strings":["Division of Biological Sciences, Section of Cell and Development Biology, University of California at San Diego, CA, USA","Division of Biological Sciences, Section of Cell and Development Biology, University of California at San Diego, La Jolla, CA, 92093-0407, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biological Sciences, Section of Cell and Development Biology, University of California at San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Division of Biological Sciences, Section of Cell and Development Biology, University of California at San Diego, La Jolla, CA, 92093-0407, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068804724","display_name":"Pamela C. Cosman","orcid":"https://orcid.org/0000-0002-4012-0176"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pamela C. Cosman","raw_affiliation_strings":["Department of Electrical and Computer Engineering, University of California at San Diego, CA, USA","Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA, 92093\u22120407, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California at San Diego, CA, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Electrical and Computer Engineering, University of California at San Diego, La Jolla, CA, 92093\u22120407, USA","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5017624817"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":null,"apc_paid":null,"fwci":0.3452,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.54727945,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"290","last_page":"293"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.9592999815940857,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10364","display_name":"Reproductive Biology and Fertility","score":0.9387999773025513,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scale-invariant-feature-transform","display_name":"Scale-invariant feature transform","score":0.8000196218490601},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.7558964490890503},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7188174724578857},{"id":"https://openalex.org/keywords/ground-truth","display_name":"Ground truth","score":0.6152704954147339},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5949939489364624},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.5760983824729919},{"id":"https://openalex.org/keywords/pixel","display_name":"Pixel","score":0.5490723252296448},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5270177125930786},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4926190972328186},{"id":"https://openalex.org/keywords/active-contour-model","display_name":"Active contour model","score":0.4835795760154724},{"id":"https://openalex.org/keywords/invariant","display_name":"Invariant (physics)","score":0.4281652271747589},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.41250959038734436},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.4081058204174042},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37649819254875183},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.23136311769485474}],"concepts":[{"id":"https://openalex.org/C61265191","wikidata":"https://www.wikidata.org/wiki/Q767770","display_name":"Scale-invariant feature transform","level":3,"score":0.8000196218490601},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.7558964490890503},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7188174724578857},{"id":"https://openalex.org/C146849305","wikidata":"https://www.wikidata.org/wiki/Q370766","display_name":"Ground truth","level":2,"score":0.6152704954147339},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5949939489364624},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.5760983824729919},{"id":"https://openalex.org/C160633673","wikidata":"https://www.wikidata.org/wiki/Q355198","display_name":"Pixel","level":2,"score":0.5490723252296448},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5270177125930786},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4926190972328186},{"id":"https://openalex.org/C112353826","wikidata":"https://www.wikidata.org/wiki/Q127313","display_name":"Active contour model","level":4,"score":0.4835795760154724},{"id":"https://openalex.org/C190470478","wikidata":"https://www.wikidata.org/wiki/Q2370229","display_name":"Invariant (physics)","level":2,"score":0.4281652271747589},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.41250959038734436},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.4081058204174042},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37649819254875183},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.23136311769485474},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2014.6867866","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2014.6867866","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2014 IEEE 11th International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:zenodo.org:1273982","is_oa":true,"landing_page_url":"https://zenodo.org/record/1273982","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:1273982","is_oa":true,"landing_page_url":"https://zenodo.org/record/1273982","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1230023165","https://openalex.org/W1966459214","https://openalex.org/W2000396646","https://openalex.org/W2097222278","https://openalex.org/W2104095591","https://openalex.org/W2114853971","https://openalex.org/W2151103935","https://openalex.org/W2151561932","https://openalex.org/W6628174443","https://openalex.org/W6675770446"],"related_works":["https://openalex.org/W3034955165","https://openalex.org/W2094920358","https://openalex.org/W2041448692","https://openalex.org/W2247121321","https://openalex.org/W2391926582","https://openalex.org/W2087391438","https://openalex.org/W1966831329","https://openalex.org/W2885157826","https://openalex.org/W2159463658","https://openalex.org/W4388208420"],"abstract_inverted_index":{"We":[0],"present":[1],"a":[2,34,72],"novel":[3],"algorithmic":[4],"approach":[5],"to":[6],"track":[7],"multiple":[8],"cell":[9,22,60,77],"junctions":[10],"automatically":[11],"in":[12],"the":[13,17,83],"developing":[14],"epidermis":[15],"of":[16,75,85],"C.":[18],"elegans":[19],"embryo.":[20],"3D":[21],"boundaries":[23],"are":[24],"projected":[25],"into":[26],"2D":[27],"for":[28],"segmentation":[29],"using":[30,40],"active":[31],"contours":[32,61],"with":[33],"non-intersection":[35],"force,":[36],"and":[37,62,79],"subsequently":[38],"tracked":[39,59],"SIFT":[41],"(Scale-Invariant":[42],"Feature":[43],"Transform)":[44],"flow.":[45],"Our":[46],"method":[47,68],"achieves":[48],"MAD":[49],"(Mean":[50],"Absolute":[51],"Distance)":[52],"less":[53],"than":[54],"3":[55],"pixels":[56],"between":[57],"all":[58],"ground":[63],"truth":[64],"data.":[65],"Using":[66],"this":[67],"we":[69],"have":[70],"generated":[71],"quantitative":[73],"description":[74],"epidermal":[76,86],"movements":[78],"shape":[80],"changes":[81],"during":[82],"process":[84],"enclosure.":[87]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
