{"id":"https://openalex.org/W2143382393","doi":"https://doi.org/10.1109/isbi.2013.6556816","title":"Motor neuron recognition in the Drosophila ventral nerve cord","display_name":"Motor neuron recognition in the Drosophila ventral nerve cord","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2143382393","doi":"https://doi.org/10.1109/isbi.2013.6556816","mag":"2143382393"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2013.6556816","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2013.6556816","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 10th International Symposium on Biomedical Imaging","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"X. Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"X. Chang","raw_affiliation_strings":["Computer and Information Science Department, Indiana University-Purdue University, USA","Comput. & Inf. Sci. Dept., Indiana Univ.-Purdue Univ. Indianapolis, Indianapolis, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Science Department, Indiana University-Purdue University, USA","institution_ids":["https://openalex.org/I592451"]},{"raw_affiliation_string":"Comput. & Inf. Sci. Dept., Indiana Univ.-Purdue Univ. Indianapolis, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049208889","display_name":"Michael D. Kim","orcid":"https://orcid.org/0000-0003-2103-6603"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.D. Kim","raw_affiliation_strings":["Molecular and Cellular Pharmacology Department, School of Medicine, University of Miami, Miller, USA","Miller Sch. of Med., Mol. & Cellular Pharmacology Dept., Univ. of Miami, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Molecular and Cellular Pharmacology Department, School of Medicine, University of Miami, Miller, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Miller Sch. of Med., Mol. & Cellular Pharmacology Dept., Univ. of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102901263","display_name":"Akira Chiba","orcid":"https://orcid.org/0000-0003-4809-2402"},"institutions":[{"id":"https://openalex.org/I145608581","display_name":"University of Miami","ror":"https://ror.org/02dgjyy92","country_code":"US","type":"education","lineage":["https://openalex.org/I145608581"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Chiba","raw_affiliation_strings":["Biology Department, University of Miami, USA","Biol. Dept., Univ. of Miami, Miami, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biology Department, University of Miami, USA","institution_ids":["https://openalex.org/I145608581"]},{"raw_affiliation_string":"Biol. Dept., Univ. of Miami, Miami, FL, USA","institution_ids":["https://openalex.org/I145608581"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014714918","display_name":"Gavriil Tsechpenakis","orcid":"https://orcid.org/0000-0002-8864-3435"},"institutions":[{"id":"https://openalex.org/I55769427","display_name":"Indiana University \u2013 Purdue University Indianapolis","ror":"https://ror.org/05gxnyn08","country_code":"US","type":"education","lineage":["https://openalex.org/I55769427","https://openalex.org/I592451"]},{"id":"https://openalex.org/I592451","display_name":"Indiana University","ror":"https://ror.org/01kg8sb98","country_code":"US","type":"education","lineage":["https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Tsechpenakis","raw_affiliation_strings":["Computer and Information Science Department, Indiana University-Purdue University, USA","Comput. & Inf. Sci. Dept., Indiana Univ.-Purdue Univ. Indianapolis, Indianapolis, IN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer and Information Science Department, Indiana University-Purdue University, USA","institution_ids":["https://openalex.org/I592451"]},{"raw_affiliation_string":"Comput. & Inf. Sci. Dept., Indiana Univ.-Purdue Univ. Indianapolis, Indianapolis, IN, USA","institution_ids":["https://openalex.org/I55769427"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1397,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.49952904,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"2","issue":null,"first_page":"1488","last_page":"1491"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10423","display_name":"Neurobiology and Insect Physiology Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10423","display_name":"Neurobiology and Insect Physiology Research","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9718999862670898,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/soma","display_name":"Soma","score":0.8125935792922974},{"id":"https://openalex.org/keywords/ventral-nerve-cord","display_name":"Ventral nerve cord","score":0.7581355571746826},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.7035589814186096},{"id":"https://openalex.org/keywords/compartment","display_name":"Compartment (ship)","score":0.6116126179695129},{"id":"https://openalex.org/keywords/axon","display_name":"Axon","score":0.5843149423599243},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.514518678188324},{"id":"https://openalex.org/keywords/spinal-cord","display_name":"Spinal cord","score":0.5096635818481445},{"id":"https://openalex.org/keywords/motor-neuron","display_name":"Motor neuron","score":0.5075715780258179},{"id":"https://openalex.org/keywords/axon-guidance","display_name":"Axon guidance","score":0.5020103454589844},{"id":"https://openalex.org/keywords/nervous-system","display_name":"Nervous system","score":0.46917301416397095},{"id":"https://openalex.org/keywords/green-fluorescent-protein","display_name":"Green fluorescent protein","score":0.4574763774871826},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4295123219490051},{"id":"https://openalex.org/keywords/neuron","display_name":"Neuron","score":0.4151785373687744},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.40655937790870667},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3345350921154022},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.10654190182685852}],"concepts":[{"id":"https://openalex.org/C2779617337","wikidata":"https://www.wikidata.org/wiki/Q842429","display_name":"Soma","level":2,"score":0.8125935792922974},{"id":"https://openalex.org/C158944026","wikidata":"https://www.wikidata.org/wiki/Q1029020","display_name":"Ventral nerve cord","level":3,"score":0.7581355571746826},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.7035589814186096},{"id":"https://openalex.org/C203635412","wikidata":"https://www.wikidata.org/wiki/Q17007432","display_name":"Compartment (ship)","level":2,"score":0.6116126179695129},{"id":"https://openalex.org/C2779530196","wikidata":"https://www.wikidata.org/wiki/Q178999","display_name":"Axon","level":2,"score":0.5843149423599243},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.514518678188324},{"id":"https://openalex.org/C2780775167","wikidata":"https://www.wikidata.org/wiki/Q9606","display_name":"Spinal cord","level":2,"score":0.5096635818481445},{"id":"https://openalex.org/C2776752467","wikidata":"https://www.wikidata.org/wiki/Q1133903","display_name":"Motor neuron","level":3,"score":0.5075715780258179},{"id":"https://openalex.org/C69125201","wikidata":"https://www.wikidata.org/wiki/Q2034716","display_name":"Axon guidance","level":3,"score":0.5020103454589844},{"id":"https://openalex.org/C545706735","wikidata":"https://www.wikidata.org/wiki/Q9404","display_name":"Nervous system","level":2,"score":0.46917301416397095},{"id":"https://openalex.org/C142613039","wikidata":"https://www.wikidata.org/wiki/Q272983","display_name":"Green fluorescent protein","level":3,"score":0.4574763774871826},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4295123219490051},{"id":"https://openalex.org/C2778794669","wikidata":"https://www.wikidata.org/wiki/Q43054","display_name":"Neuron","level":2,"score":0.4151785373687744},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.40655937790870667},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3345350921154022},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.10654190182685852},{"id":"https://openalex.org/C111368507","wikidata":"https://www.wikidata.org/wiki/Q43518","display_name":"Oceanography","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2013.6556816","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2013.6556816","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2013 IEEE 10th International Symposium on Biomedical Imaging","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W206083256","https://openalex.org/W1559348600","https://openalex.org/W1969170304","https://openalex.org/W1997931402","https://openalex.org/W2027985962","https://openalex.org/W2091766579","https://openalex.org/W2131326854","https://openalex.org/W2133258871","https://openalex.org/W2135038320","https://openalex.org/W2137214779","https://openalex.org/W2140978750","https://openalex.org/W2145835757","https://openalex.org/W2151322733","https://openalex.org/W2161969291","https://openalex.org/W2163415258","https://openalex.org/W6608418449","https://openalex.org/W6680698335","https://openalex.org/W6681579763","https://openalex.org/W6682239955","https://openalex.org/W6684100992"],"related_works":["https://openalex.org/W1985128226","https://openalex.org/W2005566012","https://openalex.org/W2324115188","https://openalex.org/W2085512772","https://openalex.org/W2948625874","https://openalex.org/W2120861180","https://openalex.org/W2079220144","https://openalex.org/W2123283055","https://openalex.org/W1969170304","https://openalex.org/W2008726570"],"abstract_inverted_index":{"We":[0,57,113],"exploit":[1],"the":[2,9,15,74,80,84,110,115,124,137,145,149],"morphological":[3],"stereotypy":[4],"and":[5,23,49,99,155],"relative":[6],"simplicity":[7],"of":[8,19,27,64,79,117,139,148],"Drosophila":[10],"nervous":[11],"system":[12],"to":[13,72],"model":[14,58],"diverse":[16],"neuronal":[17],"morphologies":[18],"individual":[20],"motor":[21,32,150],"neurons":[22,42,81],"understand":[24],"underlying":[25],"principles":[26],"synaptic":[28],"connectivity":[29],"in":[30,109,123,152],"a":[31,61,68],"circuit.":[33],"In":[34,83],"our":[35,118,130],"analysis,":[36],"we":[37,87],"use":[38],"images":[39],"depicting":[40],"single":[41],"labeled":[43],"with":[44,52,60],"green":[45],"fluorescent":[46],"protein":[47],"(GFP)":[48],"serially":[50],"imaged":[51],"laser":[53],"scanning":[54],"confocal":[55],"microscopy.":[56],"morphology":[59],"novel":[62],"formulation":[63],"Conditional":[65],"Random":[66],"Fields,":[67],"hierarchical":[69,92],"latent-state":[70,101],"CRF,":[71],"capture":[73],"highly":[75],"varying":[76],"compartment-based":[77],"structure":[78],"(soma-axon-dendrites).":[82],"training":[85,111],"phase,":[86],"follow":[88],"two":[89],"approaches:":[90],"(i)":[91],"learning,":[93,102],"were":[94],"compartment":[95,104],"labels":[96,105],"are":[97,106],"given,":[98],"(ii)":[100],"where":[103],"not":[107],"given":[108],"samples.":[112],"demonstrate":[114],"accuracy":[116],"approach":[119],"using":[120],"wild-type":[121],"MNs":[122],"larval":[125],"ventral":[126],"nerve":[127],"cord.":[128],"However,":[129],"method":[131],"can":[132],"also":[133],"be":[134],"used":[135],"for":[136],"identification":[138],"MN":[140],"mutations,":[141],"as":[142,144],"well":[143],"automated":[146],"annotation":[147],"circuitry":[151],"wild":[153],"type":[154],"mutant":[156],"animals.":[157]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}