{"id":"https://openalex.org/W2093762226","doi":"https://doi.org/10.1109/isbi.2012.6235826","title":"Detection of 3D filamentous networks from tomographic electron microscopy","display_name":"Detection of 3D filamentous networks from tomographic electron microscopy","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W2093762226","doi":"https://doi.org/10.1109/isbi.2012.6235826","mag":"2093762226"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2012.6235826","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2012.6235826","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024523136","display_name":"Leandro A. Loss","orcid":null},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Leandro A. Loss","raw_affiliation_strings":["Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047619963","display_name":"Hang Chang","orcid":"https://orcid.org/0000-0002-3773-6818"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hang Chang","raw_affiliation_strings":["Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108204124","display_name":"Purbasha Sarkar","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I38257878","display_name":"Energy Biosciences Institute","ror":"https://ror.org/04pgv9784","country_code":"US","type":"facility","lineage":["https://openalex.org/I38257878"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Purbasha Sarkar","raw_affiliation_strings":["Energy Biosciences Institute, University of California, Berkeley, CA, USA","Energy Biosciences Institute University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Energy Biosciences Institute, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I38257878","https://openalex.org/I95457486"]},{"raw_affiliation_string":"Energy Biosciences Institute University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I38257878","https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102846417","display_name":"Manfred Auer","orcid":"https://orcid.org/0000-0002-5435-9436"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]},{"id":"https://openalex.org/I38257878","display_name":"Energy Biosciences Institute","ror":"https://ror.org/04pgv9784","country_code":"US","type":"facility","lineage":["https://openalex.org/I38257878"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manfred Auer","raw_affiliation_strings":["Energy Biosciences Institute, University of California, Berkeley, CA, USA","Energy Biosciences Institute University of California, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Energy Biosciences Institute, University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I38257878","https://openalex.org/I95457486"]},{"raw_affiliation_string":"Energy Biosciences Institute University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I38257878","https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053749724","display_name":"Bahram Parvin","orcid":"https://orcid.org/0000-0002-6433-8006"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bahram Parvin","raw_affiliation_strings":["Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA"],"affiliations":[{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5024523136"],"corresponding_institution_ids":["https://openalex.org/I148283060"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.12028419,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"96","issue":null,"first_page":"1385","last_page":"1388"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10869","display_name":"Polysaccharides and Plant Cell Walls","score":0.9842000007629395,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hessian-matrix","display_name":"Hessian matrix","score":0.7985983490943909},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.6385515928268433},{"id":"https://openalex.org/keywords/electron-microscope","display_name":"Electron microscope","score":0.5909108519554138},{"id":"https://openalex.org/keywords/tomographic-reconstruction","display_name":"Tomographic reconstruction","score":0.550713300704956},{"id":"https://openalex.org/keywords/structure-tensor","display_name":"Structure tensor","score":0.5069587230682373},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.500206470489502},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.46105635166168213},{"id":"https://openalex.org/keywords/characterization","display_name":"Characterization (materials science)","score":0.422978937625885},{"id":"https://openalex.org/keywords/electron-tomography","display_name":"Electron tomography","score":0.41397589445114136},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3876541256904602},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3767073452472687},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.3489874005317688},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.32364434003829956},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3153034746646881},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2978813052177429},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.2739412784576416},{"id":"https://openalex.org/keywords/tomography","display_name":"Tomography","score":0.2692212462425232},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.23489028215408325},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19763189554214478},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.16515856981277466},{"id":"https://openalex.org/keywords/scanning-transmission-electron-microscopy","display_name":"Scanning transmission electron microscopy","score":0.14536187052726746},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.11256587505340576}],"concepts":[{"id":"https://openalex.org/C203616005","wikidata":"https://www.wikidata.org/wiki/Q620495","display_name":"Hessian matrix","level":2,"score":0.7985983490943909},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6385515928268433},{"id":"https://openalex.org/C93877712","wikidata":"https://www.wikidata.org/wiki/Q132560","display_name":"Electron microscope","level":2,"score":0.5909108519554138},{"id":"https://openalex.org/C97742081","wikidata":"https://www.wikidata.org/wiki/Q7820109","display_name":"Tomographic reconstruction","level":3,"score":0.550713300704956},{"id":"https://openalex.org/C113315163","wikidata":"https://www.wikidata.org/wiki/Q7625159","display_name":"Structure tensor","level":3,"score":0.5069587230682373},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.500206470489502},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.46105635166168213},{"id":"https://openalex.org/C2780841128","wikidata":"https://www.wikidata.org/wiki/Q5073781","display_name":"Characterization (materials science)","level":2,"score":0.422978937625885},{"id":"https://openalex.org/C75806775","wikidata":"https://www.wikidata.org/wiki/Q5358194","display_name":"Electron tomography","level":4,"score":0.41397589445114136},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3876541256904602},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3767073452472687},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.3489874005317688},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.32364434003829956},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3153034746646881},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2978813052177429},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.2739412784576416},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.2692212462425232},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.23489028215408325},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19763189554214478},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.16515856981277466},{"id":"https://openalex.org/C193016168","wikidata":"https://www.wikidata.org/wiki/Q874835","display_name":"Scanning transmission electron microscopy","level":3,"score":0.14536187052726746},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.11256587505340576},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2012.6235826","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2012.6235826","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W84374482","https://openalex.org/W1525139902","https://openalex.org/W1975227291","https://openalex.org/W1977561071","https://openalex.org/W1981386238","https://openalex.org/W2029101220","https://openalex.org/W2121314950","https://openalex.org/W2344701987"],"related_works":["https://openalex.org/W1997970450","https://openalex.org/W2380466031","https://openalex.org/W2018986990","https://openalex.org/W1993161289","https://openalex.org/W2555999489","https://openalex.org/W2951395331","https://openalex.org/W3038752912","https://openalex.org/W4286267872","https://openalex.org/W92001397","https://openalex.org/W2897610078"],"abstract_inverted_index":{"This":[0,46],"paper":[1],"presents":[2],"a":[3,35],"computational":[4],"approach":[5,73,107],"for":[6,64,81,87,98],"detection":[7,88],"of":[8,21,43,50,59,66,75,91,100],"filamentous":[9],"networks":[10],"in":[11,52,111],"3D":[12,121],"tomographic":[13,122],"electron":[14,123],"microscopy.":[15,124],"Due":[16],"to":[17,37],"the":[18,48,53],"general":[19],"heterogeneity":[20],"chemical":[22],"staining,":[23],"imaged":[24,119],"signatures":[25,42],"may":[26],"appear":[27],"punctate":[28],"and":[29,40,70,89,94,102,114],"discontinuous.":[30],"Very":[31],"often,":[32],"there":[33],"is":[34,47],"necessity":[36],"characterize":[38],"organization":[39],"phenotypic":[41],"stained":[44],"structures.":[45],"example":[49],"polysaccharides":[51],"plant":[54,116],"cell":[55,117],"wall,":[56],"where":[57],"characterization":[58],"its":[60],"inner":[61],"structure":[62],"allows":[63],"studies":[65],"their":[67],"mechanical":[68],"properties":[69],"accessibility.":[71],"Our":[72],"consists":[74],"three":[76],"steps:":[77],"(i)":[78],"Hessian":[79],"filtering":[80],"signal":[82],"enhancement;":[83],"(ii)":[84],"tensor":[85],"voting":[86],"completion":[90],"organized":[92],"patterns;":[93],"(iii)":[95],"curve":[96],"tracking":[97],"segmentation":[99],"filaments":[101,110],"junctions.":[103],"We":[104],"validated":[105],"our":[106],"by":[108,120],"detecting":[109],"synthetic":[112],"images":[113],"real":[115],"walls":[118]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
