{"id":"https://openalex.org/W1974392483","doi":"https://doi.org/10.1109/isbi.2012.6235802","title":"Analyzing multi-tag bioimages with BioIMAX colocation mining tools","display_name":"Analyzing multi-tag bioimages with BioIMAX colocation mining tools","publication_year":2012,"publication_date":"2012-05-01","ids":{"openalex":"https://openalex.org/W1974392483","doi":"https://doi.org/10.1109/isbi.2012.6235802","mag":"1974392483"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2012.6235802","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2012.6235802","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://pub.uni-bielefeld.de/record/2515687","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006755247","display_name":"Jan K\u00f6lling","orcid":"https://orcid.org/0000-0003-3957-2412"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Kolling","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075980432","display_name":"Magnus Rathke","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Magnus Rathke","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102901484","display_name":"Dominic Gardner","orcid":"https://orcid.org/0000-0002-8313-7584"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dominic Gardner","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033485866","display_name":"Tim W. Nattkemper","orcid":"https://orcid.org/0000-0002-7986-1158"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim W. Nattkemper","raw_affiliation_strings":["Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biodata Mining Group, Faculty of Technology, Bielefeld University, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082308063","display_name":"Sylvie Abouna","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127762","display_name":"Coventry (United Kingdom)","ror":"https://ror.org/030nd5313","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210127762"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sylvie Abouna","raw_affiliation_strings":["School of Life Sciences, Biomedical Research Institute, Coventry, UK","Biomedical Research Institute, School of Life Sciences, Coventry, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Biomedical Research Institute, Coventry, UK","institution_ids":["https://openalex.org/I4210127762"]},{"raw_affiliation_string":"Biomedical Research Institute, School of Life Sciences, Coventry, UK","institution_ids":["https://openalex.org/I4210127762"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027146712","display_name":"Michael Khan","orcid":"https://orcid.org/0000-0002-8591-384X"},"institutions":[{"id":"https://openalex.org/I4210127762","display_name":"Coventry (United Kingdom)","ror":"https://ror.org/030nd5313","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210127762"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael Khan","raw_affiliation_strings":["School of Life Sciences, Biomedical Research Institute, Coventry, UK","Biomedical Research Institute, School of Life Sciences, Coventry, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Life Sciences, Biomedical Research Institute, Coventry, UK","institution_ids":["https://openalex.org/I4210127762"]},{"raw_affiliation_string":"Biomedical Research Institute, School of Life Sciences, Coventry, UK","institution_ids":["https://openalex.org/I4210127762"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.03268395,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"9","issue":null,"first_page":"1304","last_page":"1307"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9692999720573425,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12867","display_name":"Advanced Biosensing Techniques and Applications","score":0.9570000171661377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8109372854232788},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8063175678253174},{"id":"https://openalex.org/keywords/upload","display_name":"Upload","score":0.6471996307373047},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.6074414253234863},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5995105504989624},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5504112839698792},{"id":"https://openalex.org/keywords/association-rule-learning","display_name":"Association rule learning","score":0.48423290252685547},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4538291096687317},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.432783842086792},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4171745777130127},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.36394619941711426},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.35180068016052246},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2507712244987488},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.14894312620162964},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07384130358695984}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8109372854232788},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8063175678253174},{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.6471996307373047},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.6074414253234863},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5995105504989624},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5504112839698792},{"id":"https://openalex.org/C193524817","wikidata":"https://www.wikidata.org/wiki/Q386780","display_name":"Association rule learning","level":2,"score":0.48423290252685547},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4538291096687317},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.432783842086792},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4171745777130127},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.36394619941711426},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.35180068016052246},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2507712244987488},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.14894312620162964},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07384130358695984},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2012.6235802","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2012.6235802","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 9th IEEE International Symposium on Biomedical Imaging (ISBI)","raw_type":"proceedings-article"},{"id":"pmh:oai:pub.librecat.org:2515687","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/2515687","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"K\u00f6lling J, Rathke M, Abouna S, Khan M, Nattkemper TW. Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools. Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"pmh:oai:pub.librecat.org:2515687","is_oa":true,"landing_page_url":"https://pub.uni-bielefeld.de/record/2515687","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"K\u00f6lling J, Rathke M, Abouna S, Khan M, Nattkemper TW. Analyzing Multi-Tag Bioimages with BIOIMAX colocation mining tools. Presented at the IEEE International Symposium on BIOMEDICAL IMAGING (ISBI), Barcelona.","raw_type":"info:eu-repo/semantics/conferenceObject"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.6200000047683716}],"awards":[],"funders":[{"id":"https://openalex.org/F4320320279","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W96953098","https://openalex.org/W1488447266","https://openalex.org/W1564393679","https://openalex.org/W1570448133","https://openalex.org/W2035098389","https://openalex.org/W2039537951","https://openalex.org/W2074947364","https://openalex.org/W2114319457","https://openalex.org/W2124733101","https://openalex.org/W2128339343","https://openalex.org/W2133059825","https://openalex.org/W2136861779","https://openalex.org/W2966207845","https://openalex.org/W6959727859"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W3003759491","https://openalex.org/W2542318691","https://openalex.org/W2547096368"],"abstract_inverted_index":{"The":[0],"application":[1],"of":[2,11,17,32,43,121],"multi-tag":[3],"protocols":[4],"in":[5,22,139],"fluorescence":[6],"microscopy":[7,141],"allows":[8],"the":[9,30,44,107,111,131,140,151],"visualization":[10,134],"a":[12,23,26,38],"large":[13,158],"number":[14],"(>;":[15],"10)":[16],"molecules":[18],"(i.":[19],"e.":[20],"proteins)":[21],"sample":[24],"(like":[25,143],"tissue":[27],"section).":[28],"However,":[29],"analysis":[31,96],"such":[33],"high":[34],"dimensional":[35],"bioimages":[36],"is":[37],"difficult":[39,55],"task":[40],"for":[41,49],"most":[42],"labs,":[45],"since":[46],"software":[47],"solutions":[48],"particular":[50],"data":[51],"mining":[52,126,149],"steps":[53],"are":[54],"to":[56],"use":[57],"or":[58],"just":[59],"not":[60],"available.":[61],"In":[62],"this":[63],"paper":[64],"we":[65],"present":[66],"two":[67],"new":[68],"free":[69],"online":[70,94],"tools:":[71],"MICOLT":[72],"(Multivariate":[73,79],"Image":[74,80],"COlocation":[75],"Tool)":[76],"and":[77,109,133,146,159],"MIFIST":[78],"Frequent":[81],"Item":[82],"Set":[83],"Tool).":[84],"Both":[85],"tools":[86,108,129],"can":[87,101],"be":[88],"used":[89],"via":[90],"our":[91],"recently":[92],"proposed":[93],"bioimage":[95,104],"platform":[97],"BioIMAX,":[98],"so":[99],"users":[100,116],"upload":[102],"their":[103],"data,":[105],"apply":[106],"share":[110],"results":[112],"with":[113,127],"other":[114],"invited":[115],"based":[117],"on":[118],"BioIMAX'":[119],"concept":[120],"shared":[122],"virtual":[123],"projects.":[124],"Data":[125],"these":[128],"includes":[130],"computation":[132],"colocation":[135],"factors":[136],"well":[137],"established":[138],"community":[142],"Mander's":[144],"score)":[145],"association":[147],"rule":[148],"following":[150],"frequent":[152],"item":[153],"set":[154],"principle,":[155],"thereby":[156],"supporting":[157],"small":[160],"scale":[161],"analysis.":[162]},"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
