{"id":"https://openalex.org/W2143931684","doi":"https://doi.org/10.1109/isbi.2011.5872695","title":"Tracking C. elegans swimming for high-throughput phenotyping","display_name":"Tracking C. elegans swimming for high-throughput phenotyping","publication_year":2011,"publication_date":"2011-03-01","ids":{"openalex":"https://openalex.org/W2143931684","doi":"https://doi.org/10.1109/isbi.2011.5872695","mag":"2143931684"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2011.5872695","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872695","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060737037","display_name":"Christophe Restif","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christophe Restif","raw_affiliation_strings":["Center for Computational Biomedicine Imaging and Modeling, Rutgers University, NJ, USA","Center for Computational Biomedicine Imaging and Modeling, Rutgers, New Jersey, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biomedicine Imaging and Modeling, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Center for Computational Biomedicine Imaging and Modeling, Rutgers, New Jersey, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018922349","display_name":"Carolina Ib\u00e1\u00f1ez\u2010Ventoso","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carolina Ibanez-Ventoso","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Rutgers University, NJ, USA","Department of Molecular Biology and Biochemistry, Rutgers, New Jersey, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Rutgers, New Jersey, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053985419","display_name":"Monica Driscoll","orcid":"https://orcid.org/0000-0002-8751-7429"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Monica Driscoll","raw_affiliation_strings":["Department of Molecular Biology and Biochemistry, Rutgers University, NJ, USA","Department of Molecular Biology and Biochemistry, Rutgers, New Jersey, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Department of Molecular Biology and Biochemistry, Rutgers, New Jersey, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109600054","display_name":"Dimitris Metaxas","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dimitris Metaxas","raw_affiliation_strings":["Center for Computational Biomedicine Imaging and Modeling, Rutgers University, NJ, USA","Center for Computational Biomedicine Imaging and Modeling, Rutgers, New Jersey, USA"],"affiliations":[{"raw_affiliation_string":"Center for Computational Biomedicine Imaging and Modeling, Rutgers University, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Center for Computational Biomedicine Imaging and Modeling, Rutgers, New Jersey, USA","institution_ids":["https://openalex.org/I102322142"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060737037"],"corresponding_institution_ids":["https://openalex.org/I102322142"],"apc_list":null,"apc_paid":null,"fwci":0.175,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.4445245,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"6","issue":null,"first_page":"1542","last_page":"1548"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10342","display_name":"Circadian rhythm and melatonin","score":0.9728999733924866,"subfield":{"id":"https://openalex.org/subfields/2807","display_name":"Endocrine and Autonomic Systems"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9539999961853027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crawling","display_name":"Crawling","score":0.7916182279586792},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7359319925308228},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.6246730089187622},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5742448568344116},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.5719199776649475},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5355318188667297},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4688827693462372},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.45901361107826233},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.44800904393196106},{"id":"https://openalex.org/keywords/track","display_name":"Track (disk drive)","score":0.4199076294898987},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1765250265598297},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.0961245596408844},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.06402167677879333}],"concepts":[{"id":"https://openalex.org/C100368936","wikidata":"https://www.wikidata.org/wiki/Q1411725","display_name":"Crawling","level":2,"score":0.7916182279586792},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7359319925308228},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.6246730089187622},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5742448568344116},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.5719199776649475},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5355318188667297},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4688827693462372},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.45901361107826233},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.44800904393196106},{"id":"https://openalex.org/C89992363","wikidata":"https://www.wikidata.org/wiki/Q5961558","display_name":"Track (disk drive)","level":2,"score":0.4199076294898987},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1765250265598297},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.0961245596408844},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.06402167677879333},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2011.5872695","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872695","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.8899999856948853,"id":"https://metadata.un.org/sdg/14","display_name":"Life below water"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1548653701","https://openalex.org/W1818162181","https://openalex.org/W1927539495","https://openalex.org/W1968335909","https://openalex.org/W1988065937","https://openalex.org/W1996720572","https://openalex.org/W2003599098","https://openalex.org/W2013713246","https://openalex.org/W2018290089","https://openalex.org/W2025794859","https://openalex.org/W2034734284","https://openalex.org/W2044495969","https://openalex.org/W2074005945","https://openalex.org/W2074371112","https://openalex.org/W2084816989","https://openalex.org/W2091284527","https://openalex.org/W2094294325","https://openalex.org/W2105112945","https://openalex.org/W2113242953","https://openalex.org/W2130760852","https://openalex.org/W2132599819","https://openalex.org/W2137659599","https://openalex.org/W2141533058","https://openalex.org/W2143025695","https://openalex.org/W2150389271","https://openalex.org/W2151969485","https://openalex.org/W2154389993","https://openalex.org/W2164857604","https://openalex.org/W6638487984","https://openalex.org/W6681188241","https://openalex.org/W6682264057"],"related_works":["https://openalex.org/W4393220254","https://openalex.org/W4321258516","https://openalex.org/W2051833850","https://openalex.org/W4287845917","https://openalex.org/W3156164993","https://openalex.org/W2385015894","https://openalex.org/W2171573941","https://openalex.org/W4317382653","https://openalex.org/W3119324922","https://openalex.org/W4390135167"],"abstract_inverted_index":{"The":[0,120],"model":[1,80],"organism":[2],"C.":[3],"elegans":[4],"is":[5,45,72,83],"widely":[6],"used":[7],"for":[8,47],"phenotype":[9,49,147],"studies,":[10],"where":[11],"the":[12,54,88,92,118],"behaviors":[13],"of":[14,17,29,56,108,110,117,128,131,133,140,153],"large":[15],"numbers":[16],"individuals":[18],"have":[19],"to":[20,37,53,64,91],"be":[21],"measured":[22],"accurately.":[23],"Swimming":[24],"motions":[25],"exhibit":[26],"unique":[27],"aspects":[28],"their":[30],"behavior,":[31],"but":[32,51],"are":[33,114],"significantly":[34],"more":[35],"difficult":[36],"track":[38,67],"than":[39],"crawling":[40],"motions.":[41],"Filming":[42],"multiple":[43,68],"worms":[44,111],"necessary":[46],"high-throughput":[48],"experiments,":[50],"adds":[52],"complexity":[55],"tracking.":[57],"Here":[58],"we":[59,122],"present":[60],"a":[61,125,129,137],"novel":[62,146],"method":[63,98],"segment":[65],"and":[66,102,105,145],"swimming":[69],"worms.":[70],"Segmentation":[71],"done":[73],"by":[74,78,85],"low-level-vision":[75],"processing":[76],"followed":[77],"articulated":[79,89],"fitting.":[81],"Tracking":[82],"performed":[84],"iteratively":[86],"adjusting":[87],"models":[90,121],"successive":[93],"frames.":[94],"We":[95,135],"tested":[96],"our":[97],"on":[99],"404":[100],"videos":[101],"2020":[103],"worms,":[104],"report":[106,136],"results":[107],"94.1%":[109],"tracked,":[112],"which":[113],"valid":[115],"92.1%":[116],"time.":[119],"use":[123],"enable":[124],"cheap":[126],"computation":[127],"variety":[130],"measures":[132],"behavior.":[134,154],"quantitative":[138],"comparison":[139],"three":[141],"mutants":[142],"using":[143],"existing":[144],"measures,":[148],"showing":[149],"statistically":[150],"significant":[151],"differences":[152]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}