{"id":"https://openalex.org/W2113608909","doi":"https://doi.org/10.1109/isbi.2011.5872681","title":"Atlas based method for the automated segmentation and quantification of knee features: Data from the osteoarthritis initiative","display_name":"Atlas based method for the automated segmentation and quantification of knee features: Data from the osteoarthritis initiative","publication_year":2011,"publication_date":"2011-03-01","ids":{"openalex":"https://openalex.org/W2113608909","doi":"https://doi.org/10.1109/isbi.2011.5872681","mag":"2113608909"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2011.5872681","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872681","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://zenodo.org/record/3432756","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075416557","display_name":"Jos\u00e9 G. Tamez\u2010Pe\u00f1a","orcid":"https://orcid.org/0000-0003-1361-5162"},"institutions":[{"id":"https://openalex.org/I98461037","display_name":"Tecnol\u00f3gico de Monterrey","ror":"https://ror.org/03ayjn504","country_code":"MX","type":"education","lineage":["https://openalex.org/I98461037"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Jose Tamez-Pena","raw_affiliation_strings":["ITESM, Escuela de Medicina, Monterrey, NL, M\u0233xico","Qmetrics Technology, LLC, Rochester, NY"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ITESM, Escuela de Medicina, Monterrey, NL, M\u0233xico","institution_ids":["https://openalex.org/I98461037"]},{"raw_affiliation_string":"Qmetrics Technology, LLC, Rochester, NY","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102312985","display_name":"Patricia Gonz\u00e1lez","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Patricia Gonzalez","raw_affiliation_strings":["Qmetrics Technology, LLC, Rochester, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qmetrics Technology, LLC, Rochester, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058411478","display_name":"Joshua \u039c. Farber","orcid":"https://orcid.org/0000-0003-3224-0378"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Joshua Farber","raw_affiliation_strings":["Qmetrics Technology, LLC, Rochester, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qmetrics Technology, LLC, Rochester, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008856234","display_name":"Karl G. Baum","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Karl Baum","raw_affiliation_strings":["Qmetrics Technology, LLC, Rochester, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qmetrics Technology, LLC, Rochester, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014858565","display_name":"Eduard Schreyer","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eduard Schreyer","raw_affiliation_strings":["Qmetrics Technology, LLC, Rochester, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qmetrics Technology, LLC, Rochester, NY, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025332098","display_name":"Saara T\u00f6tterman","orcid":"https://orcid.org/0009-0005-0762-3096"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Saara Totterman","raw_affiliation_strings":["Qmetrics Technology, LLC, Rochester, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qmetrics Technology, LLC, Rochester, NY, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":20.6308,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.99103139,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"1484","last_page":"1487"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10105","display_name":"Osteoarthritis Treatment and Mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10105","display_name":"Osteoarthritis Treatment and Mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2745","display_name":"Rheumatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11018","display_name":"Lower Extremity Biomechanics and Pathologies","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10562","display_name":"Total Knee Arthroplasty Outcomes","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8138667345046997},{"id":"https://openalex.org/keywords/osteoarthritis","display_name":"Osteoarthritis","score":0.7938054800033569},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6584857106208801},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.6153743267059326},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5908732414245605},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5773573517799377},{"id":"https://openalex.org/keywords/knee-cartilage","display_name":"Knee cartilage","score":0.5102376937866211},{"id":"https://openalex.org/keywords/cartilage","display_name":"Cartilage","score":0.4999814033508301},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.49927306175231934},{"id":"https://openalex.org/keywords/reproducibility","display_name":"Reproducibility","score":0.46949365735054016},{"id":"https://openalex.org/keywords/ranging","display_name":"Ranging","score":0.4676259160041809},{"id":"https://openalex.org/keywords/data-set","display_name":"Data set","score":0.4672565162181854},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4362953007221222},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.27145668864250183},{"id":"https://openalex.org/keywords/articular-cartilage","display_name":"Articular cartilage","score":0.229551762342453},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21988734602928162},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.17555850744247437},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08576643466949463}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8138667345046997},{"id":"https://openalex.org/C2776164576","wikidata":"https://www.wikidata.org/wiki/Q62736","display_name":"Osteoarthritis","level":3,"score":0.7938054800033569},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6584857106208801},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.6153743267059326},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5908732414245605},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5773573517799377},{"id":"https://openalex.org/C3018143345","wikidata":"https://www.wikidata.org/wiki/Q37425","display_name":"Knee cartilage","level":5,"score":0.5102376937866211},{"id":"https://openalex.org/C2780550940","wikidata":"https://www.wikidata.org/wiki/Q502730","display_name":"Cartilage","level":2,"score":0.4999814033508301},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.49927306175231934},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.46949365735054016},{"id":"https://openalex.org/C115051666","wikidata":"https://www.wikidata.org/wiki/Q6522493","display_name":"Ranging","level":2,"score":0.4676259160041809},{"id":"https://openalex.org/C58489278","wikidata":"https://www.wikidata.org/wiki/Q1172284","display_name":"Data set","level":2,"score":0.4672565162181854},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4362953007221222},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.27145668864250183},{"id":"https://openalex.org/C3020332539","wikidata":"https://www.wikidata.org/wiki/Q2014564","display_name":"Articular cartilage","level":4,"score":0.229551762342453},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21988734602928162},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.17555850744247437},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08576643466949463},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2011.5872681","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872681","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},{"id":"pmh:oai:zenodo.org:3432756","is_oa":true,"landing_page_url":"https://zenodo.org/record/3432756","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"}],"best_oa_location":{"id":"pmh:oai:zenodo.org:3432756","is_oa":true,"landing_page_url":"https://zenodo.org/record/3432756","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.5}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1972278775","https://openalex.org/W1976479564","https://openalex.org/W2019401802","https://openalex.org/W2045626855","https://openalex.org/W2102308673","https://openalex.org/W2110410260","https://openalex.org/W2132697886","https://openalex.org/W2167872444"],"related_works":["https://openalex.org/W2783354812","https://openalex.org/W4384112194","https://openalex.org/W2103009189","https://openalex.org/W4312958259","https://openalex.org/W4308259661","https://openalex.org/W4390813131","https://openalex.org/W2349383066","https://openalex.org/W4328132048","https://openalex.org/W1969901537","https://openalex.org/W2376202349"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"a":[3],"fully":[4],"unsupervised":[5],"segmentation":[6,10,89],"method":[7],"for":[8],"the":[9,17,46,54,84,99,115,131],"of":[11,16,61,98,114,130],"3D":[12],"DESS":[13,63],"MRI":[14,21,37,62],"images":[15,69],"human":[18,26],"knee.":[19,116],"Five":[20],"knees":[22,100],"manually":[23],"segmented":[24],"by":[25],"experts":[27],"are":[28,42],"used":[29,103],"as":[30],"reference":[31],"atlases":[32],"to":[33,44,93,104,125,144],"automatically":[34],"segment":[35],"subsequent":[36],"images.":[38],"The":[39,49,65,88,117,127],"five":[40],"segmentations":[41,97],"averaged":[43],"create":[45,94],"knee":[47],"segmentation.":[48],"methodology":[50,90,135],"was":[51,91],"tested":[52],"on":[53],"pilot":[55],"Osteoarthritis":[56],"Initiative":[57],"(OAI)":[58],"image":[59],"set":[60],"sequences.":[64],"data":[66],"includes":[67],"longitudinal":[68,128],"from":[70,123,142],"healthy":[71],"normals":[72],"and":[73,82,108],"subjects":[74],"with":[75],"osteoarthritis":[76],"(OA)":[77],"scanned":[78],"twice":[79],"at":[80,83],"baseline":[81],"24":[85],"month":[86],"follow-up.":[87],"able":[92],"precise":[95],"cartilage":[96,132],"that":[101],"were":[102],"extract":[105],"volume,":[106],"thickness":[107,119,133],"subchondral":[109],"bone":[110],"plate":[111],"curvature":[112],"information":[113],"quantitative":[118],"showed":[120,136],"precisions":[121],"ranging":[122,141],"0.025mm":[124],"0.051mm.":[126],"reproducibility":[129],"measurement":[134],"intra-class":[137],"correlations":[138],"coefficients":[139],"(ICC)":[140],"0.39":[143],"0.79.":[145]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2012,"cited_by_count":5}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-06-24T00:00:00"}