{"id":"https://openalex.org/W2142290123","doi":"https://doi.org/10.1109/isbi.2011.5872652","title":"Automated extraction of blood vessel networks from 3D microscopy image stacks via multi-scale principal curve tracing","display_name":"Automated extraction of blood vessel networks from 3D microscopy image stacks via multi-scale principal curve tracing","publication_year":2011,"publication_date":"2011-03-01","ids":{"openalex":"https://openalex.org/W2142290123","doi":"https://doi.org/10.1109/isbi.2011.5872652","mag":"2142290123"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2011.5872652","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872652","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047671906","display_name":"Erhan Bas","orcid":"https://orcid.org/0000-0002-6719-0940"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Erhan Bas","raw_affiliation_strings":["Cognitive Systems Laboratory, Northeastern University, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Cognitive Systems Laboratory, Northeastern University, Boston, MA, USA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080711631","display_name":"Nastaran Ghadarghadar","orcid":null},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nastaran Ghadarghadar","raw_affiliation_strings":["Cognitive Systems Laboratory, Northeastern University, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Cognitive Systems Laboratory, Northeastern University, Boston, MA, USA","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083261801","display_name":"Deniz Erdo\u011fmu\u015f","orcid":"https://orcid.org/0000-0002-1114-3539"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Deniz Erdogmus","raw_affiliation_strings":["Cognitive Systems Laboratory, Northeastern University, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Cognitive Systems Laboratory, Northeastern University, Boston, MA, USA","institution_ids":["https://openalex.org/I12912129"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5047671906"],"corresponding_institution_ids":["https://openalex.org/I12912129"],"apc_list":null,"apc_paid":null,"fwci":0.7848,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.77023628,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1358","last_page":"1361"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11438","display_name":"Retinal Imaging and Analysis","score":0.9866999983787537,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9559000134468079,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.8513939380645752},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6834737658500671},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.653253972530365},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6218396425247192},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5825912356376648},{"id":"https://openalex.org/keywords/feature-extraction","display_name":"Feature extraction","score":0.5551679134368896},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5274781584739685},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5088887214660645},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.505242645740509},{"id":"https://openalex.org/keywords/projection","display_name":"Projection (relational algebra)","score":0.43525534868240356},{"id":"https://openalex.org/keywords/principal-component-analysis","display_name":"Principal component analysis","score":0.4289758801460266},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.11805424094200134}],"concepts":[{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.8513939380645752},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6834737658500671},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.653253972530365},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6218396425247192},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5825912356376648},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.5551679134368896},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5274781584739685},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5088887214660645},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.505242645740509},{"id":"https://openalex.org/C57493831","wikidata":"https://www.wikidata.org/wiki/Q3134666","display_name":"Projection (relational algebra)","level":2,"score":0.43525534868240356},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.4289758801460266},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.11805424094200134},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2011.5872652","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872652","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.660.6555","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.660.6555","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www1.ece.neu.edu/%7Eerdogmus/publications/C155_ISBI2011_VesselTracing_Erhan.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W2001658278","https://openalex.org/W2096496077","https://openalex.org/W2101632303","https://openalex.org/W2123102307","https://openalex.org/W2147196412","https://openalex.org/W2153392724","https://openalex.org/W2162098863","https://openalex.org/W2168005337","https://openalex.org/W2402934106","https://openalex.org/W3100742177","https://openalex.org/W6713085890"],"related_works":["https://openalex.org/W1975632186","https://openalex.org/W3027745756","https://openalex.org/W3205213561","https://openalex.org/W2531880140","https://openalex.org/W2126145365","https://openalex.org/W2036609560","https://openalex.org/W346861917","https://openalex.org/W3024018414","https://openalex.org/W2888673113","https://openalex.org/W3000541886"],"abstract_inverted_index":{"Blood":[0],"vessel":[1,50],"segmentation,":[2],"that":[3,57],"is,":[4],"extraction":[5,51,105],"of":[6,20,34,61,106,126],"the":[7,18,25,30,59,104,110,124],"center":[8],"lines":[9],"and":[10,23,32,38,77,100],"corresponding":[11],"local":[12],"cylinder":[13],"radii":[14],"are":[15,133],"important":[16,28],"for":[17,29,49,103,123],"study":[19],"vascular":[21],"diseases,":[22],"in":[24,52,109],"brain":[26,111,120],"also":[27],"modeling":[31],"understanding":[33],"relationships":[35],"between":[36],"hemodynamics":[37],"electrical":[39],"neural":[40,73,131],"activity.":[41],"Several":[42],"image":[43,115],"processing":[44],"methods":[45],"have":[46],"been":[47],"proposed":[48],"many":[53],"domains":[54],"including":[55],"those":[56],"explore":[58],"use":[60],"pattern":[62],"recognition":[63],"techniques,":[64],"model-based":[65],"approaches,":[66,69,72,76],"tracking":[67],"based":[68,71,75,92],"artificial":[70],"network":[74],"miscellaneous":[78],"tube-like":[79],"object":[80],"detection":[81],"approaches.":[82],"In":[83],"this":[84],"paper,":[85],"we":[86],"propose":[87],"a":[88],"ridge":[89],"tracing":[90,101],"approach":[91],"on":[93,118,130],"recently":[94],"developed":[95],"principal":[96],"curve":[97],"(PC)":[98],"projection":[99],"algorithms":[102],"vasculature":[107],"networks":[108],"from":[112],"3D":[113],"microscopy":[114],"stacks.":[116],"Results":[117],"mice":[119],"imagery":[121],"obtained":[122],"purpose":[125],"studying":[127],"hemodynamic":[128],"effects":[129],"activity":[132],"promising.":[134]},"counts_by_year":[{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}