{"id":"https://openalex.org/W2169369258","doi":"https://doi.org/10.1109/isbi.2011.5872452","title":"A fast reconstruction algorithm based on parallel coordinate descent optimization for in vivo tomographic bioluminescence imaging","display_name":"A fast reconstruction algorithm based on parallel coordinate descent optimization for in vivo tomographic bioluminescence imaging","publication_year":2011,"publication_date":"2011-03-01","ids":{"openalex":"https://openalex.org/W2169369258","doi":"https://doi.org/10.1109/isbi.2011.5872452","mag":"2169369258"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2011.5872452","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872452","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111684661","display_name":"Kai Liu","orcid":"https://orcid.org/0009-0003-3372-729X"},"institutions":[{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kai Liu","raw_affiliation_strings":["Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100429270","display_name":"Jie Tian","orcid":"https://orcid.org/0000-0003-0498-0432"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]},{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Tian","raw_affiliation_strings":["Life Science Center, Xidian University, Xi'an, Shaanxi, China","Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Science Center, Xidian University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I149594827"]},{"raw_affiliation_string":"Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066153744","display_name":"Xin Yang","orcid":"https://orcid.org/0000-0003-3431-5118"},"institutions":[{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xin Yang","raw_affiliation_strings":["Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110248859","display_name":"Chenghu Qin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenghu Qin","raw_affiliation_strings":["Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080912825","display_name":"Shouping Zhu","orcid":"https://orcid.org/0000-0002-1598-6947"},"institutions":[{"id":"https://openalex.org/I149594827","display_name":"Xidian University","ror":"https://ror.org/05s92vm98","country_code":"CN","type":"education","lineage":["https://openalex.org/I149594827"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shouping Zhu","raw_affiliation_strings":["Life Science Center, Xidian University, Xi'an, Shaanxi, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Life Science Center, Xidian University, Xi'an, Shaanxi, China","institution_ids":["https://openalex.org/I149594827"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071835685","display_name":"Dong Han","orcid":"https://orcid.org/0000-0002-0692-6467"},"institutions":[{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dong Han","raw_affiliation_strings":["Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101948996","display_name":"Ping Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I4210112150","display_name":"Institute of Automation","ror":"https://ror.org/022c3hy66","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210112150"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ping Wu","raw_affiliation_strings":["Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Image Processing Group, Institute of Automation, Chinese Academy and Sciences, Beijing, China","institution_ids":["https://openalex.org/I4210112150"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"14","issue":null,"first_page":"492","last_page":"495"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tomographic-reconstruction","display_name":"Tomographic reconstruction","score":0.7210687398910522},{"id":"https://openalex.org/keywords/bioluminescence-imaging","display_name":"Bioluminescence imaging","score":0.6787633895874023},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.664825975894928},{"id":"https://openalex.org/keywords/tomography","display_name":"Tomography","score":0.5730198621749878},{"id":"https://openalex.org/keywords/iterative-reconstruction","display_name":"Iterative reconstruction","score":0.5527235865592957},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5526762008666992},{"id":"https://openalex.org/keywords/bioluminescence","display_name":"Bioluminescence","score":0.5048225522041321},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4942012131214142},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3203306794166565},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28892815113067627},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1656126081943512},{"id":"https://openalex.org/keywords/luciferase","display_name":"Luciferase","score":0.12905007600784302},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1121918261051178},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.11201241612434387}],"concepts":[{"id":"https://openalex.org/C97742081","wikidata":"https://www.wikidata.org/wiki/Q7820109","display_name":"Tomographic reconstruction","level":3,"score":0.7210687398910522},{"id":"https://openalex.org/C161997846","wikidata":"https://www.wikidata.org/wiki/Q4915066","display_name":"Bioluminescence imaging","level":5,"score":0.6787633895874023},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.664825975894928},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.5730198621749878},{"id":"https://openalex.org/C141379421","wikidata":"https://www.wikidata.org/wiki/Q6094427","display_name":"Iterative reconstruction","level":2,"score":0.5527235865592957},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5526762008666992},{"id":"https://openalex.org/C5176359","wikidata":"https://www.wikidata.org/wiki/Q179924","display_name":"Bioluminescence","level":2,"score":0.5048225522041321},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4942012131214142},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3203306794166565},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28892815113067627},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1656126081943512},{"id":"https://openalex.org/C111335760","wikidata":"https://www.wikidata.org/wiki/Q95385166","display_name":"Luciferase","level":4,"score":0.12905007600784302},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1121918261051178},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.11201241612434387},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C54009773","wikidata":"https://www.wikidata.org/wiki/Q1429031","display_name":"Transfection","level":3,"score":0.0},{"id":"https://openalex.org/C81885089","wikidata":"https://www.wikidata.org/wiki/Q189082","display_name":"Cell culture","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2011.5872452","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2011.5872452","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1977871291","https://openalex.org/W2039879564","https://openalex.org/W2041552578","https://openalex.org/W2042907121","https://openalex.org/W2091267174","https://openalex.org/W2147281055","https://openalex.org/W2148556090","https://openalex.org/W2167023378"],"related_works":["https://openalex.org/W4386495842","https://openalex.org/W4386758351","https://openalex.org/W1964907928","https://openalex.org/W4367366364","https://openalex.org/W165594268","https://openalex.org/W2763473976","https://openalex.org/W2393510792","https://openalex.org/W2065552391","https://openalex.org/W4255858473","https://openalex.org/W2423084403"],"abstract_inverted_index":{"Bioluminescence":[0],"imaging":[1,23,29,56,135,172],"(BLI)":[2],"offers":[3],"an":[4],"alternative":[5],"opportunity":[6],"for":[7,54,73,125,169],"non-invasively":[8],"visualizing":[9],"biological":[10],"processes":[11],"at":[12],"the":[13,49,81,84,95,99,109,132,134,138,145,163],"physiological":[14],"and":[15,105,159],"molecular":[16],"levels":[17],"in":[18,74,91],"whole":[19],"animals.":[20],"Tomographic":[21],"bioluminescence":[22,77],"(TBI)":[24],"can":[25,121],"further":[26],"translate":[27],"planar":[28],"into":[30],"three-dimensional":[31],"quantitative":[32],"bioluminescent":[33],"source":[34],"distribution.":[35],"Although":[36],"many":[37],"reconstruction":[38,63],"methods":[39,51],"have":[40],"been":[41],"developed,":[42],"efforts":[43],"are":[44],"still":[45],"needed":[46],"to":[47,93,108,147],"make":[48],"tomographic":[50,76,150],"more":[52],"practical":[53],"biomedical":[55],"experiments.":[57],"In":[58,131],"this":[59,119],"paper,":[60],"a":[61,103,153],"fast":[62],"algorithm":[64],"based":[65],"on":[66,80],"parallel":[67],"coordinate":[68],"descent":[69],"optimization":[70],"is":[71,87,116],"proposed":[72,85,139],"vivo":[75],"imaging.":[78],"Based":[79],"shrinking":[82],"operation,":[83],"method":[86,140],"very":[88],"efficient.":[89],"Moreover,":[90,162],"order":[92],"obtain":[94],"analytic":[96],"form":[97],"of":[98,137,156],"updating":[100],"shrinkage":[101],"function,":[102],"smooth":[104],"convex":[106],"approximation":[107],"regularization":[110,157],"term":[111,120],"L":[112],"<sub":[113],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[114],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">p</sub>":[115],"utilized,":[117],"so":[118],"be":[122],"easily":[123],"generalized":[124],"1":[126],"\u2264":[127,129],"p":[128],"2.":[130],"experiments,":[133],"performance":[136],"demonstrates":[141],"that":[142],"it":[143,167],"has":[144],"ability":[146],"recover":[148],"reliable":[149],"results":[151],"with":[152],"wide":[154],"range":[155],"parameters":[158],"different":[160],"p.":[161],"high":[164],"efficiency":[165],"makes":[166],"potential":[168],"real":[170],"time":[171],"reconstruction.":[173]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
