{"id":"https://openalex.org/W2112360004","doi":"https://doi.org/10.1109/isbi.2010.5490415","title":"Multi-contrast deep nuclei segmentation using a probabilistic atlas","display_name":"Multi-contrast deep nuclei segmentation using a probabilistic atlas","publication_year":2010,"publication_date":"2010-04-01","ids":{"openalex":"https://openalex.org/W2112360004","doi":"https://doi.org/10.1109/isbi.2010.5490415","mag":"2112360004"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2010.5490415","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2010.5490415","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072135714","display_name":"Linda Marrakchi\u2010Kacem","orcid":null},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Linda Marrakchi-Kacem","raw_affiliation_strings":["NeuroSpin, CEA, Gif-sur-Yvette, France","NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France"],"affiliations":[{"raw_affiliation_string":"NeuroSpin, CEA, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]},{"raw_affiliation_string":"NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049489554","display_name":"Cyril Poupon","orcid":"https://orcid.org/0000-0001-7906-8945"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cyril Poupon","raw_affiliation_strings":["NeuroSpin, CEA, Gif-sur-Yvette, France","NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France"],"affiliations":[{"raw_affiliation_string":"NeuroSpin, CEA, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]},{"raw_affiliation_string":"NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035699131","display_name":"Jean\u2010Fran\u00e7ois Mangin","orcid":"https://orcid.org/0000-0002-1612-461X"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Francois Mangin","raw_affiliation_strings":["NeuroSpin, CEA, Gif-sur-Yvette, France","NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France"],"affiliations":[{"raw_affiliation_string":"NeuroSpin, CEA, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]},{"raw_affiliation_string":"NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017584207","display_name":"Fabrice Poupon","orcid":null},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fabrice Poupon","raw_affiliation_strings":["NeuroSpin, CEA, Gif-sur-Yvette, France","NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France"],"affiliations":[{"raw_affiliation_string":"NeuroSpin, CEA, Gif-sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]},{"raw_affiliation_string":"NeuroSpin, CEA, 91191, Gif-Sur-Yvette, France","institution_ids":["https://openalex.org/I2738703131"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072135714"],"corresponding_institution_ids":["https://openalex.org/I2738703131"],"apc_list":null,"apc_paid":null,"fwci":0.9689,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.77502455,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"6512","issue":null,"first_page":"61","last_page":"64"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12552","display_name":"Fetal and Pediatric Neurological Disorders","score":0.9865999817848206,"subfield":{"id":"https://openalex.org/subfields/2735","display_name":"Pediatrics, Perinatology and Child Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contrast","display_name":"Contrast (vision)","score":0.7707420587539673},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.7414424419403076},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.718652606010437},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6398845911026001},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6007125377655029},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5404106378555298},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4441826045513153},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.36470264196395874}],"concepts":[{"id":"https://openalex.org/C2776502983","wikidata":"https://www.wikidata.org/wiki/Q690182","display_name":"Contrast (vision)","level":2,"score":0.7707420587539673},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.7414424419403076},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.718652606010437},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6398845911026001},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6007125377655029},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5404106378555298},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4441826045513153},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.36470264196395874},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2010.5490415","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2010.5490415","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1877020599","https://openalex.org/W1987565821","https://openalex.org/W2000439270","https://openalex.org/W2004293194","https://openalex.org/W2020790730","https://openalex.org/W2027955893","https://openalex.org/W2059340634","https://openalex.org/W2077079080","https://openalex.org/W2102196538","https://openalex.org/W2127751118","https://openalex.org/W6674924678"],"related_works":["https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2324878645","https://openalex.org/W2803101231","https://openalex.org/W4284509","https://openalex.org/W4393084406","https://openalex.org/W606911313","https://openalex.org/W4229506690","https://openalex.org/W638747717"],"abstract_inverted_index":{"In":[0],"this":[1],"paper":[2],"we":[3,87],"propose":[4],"a":[5,17,41,62,118],"new":[6],"hybrid":[7],"segmentation":[8],"approach":[9],"of":[10,21,30,51,64,74,93,101],"the":[11,28,31,58,90,98],"deep":[12],"brain":[13],"structures":[14],"based":[15],"on":[16,61],"multi-contrast":[18,91],"deformable":[19],"model":[20],"regions":[22],"in":[23,114],"competition,":[24],"with":[25,72],"deformations":[26],"preserving":[27],"topology":[29],"structures,":[32],"as":[33,35],"well":[34],"their":[36],"shape":[37],"and":[38,44,76,109],"position,":[39],"using":[40],"probabilistic":[42],"atlas":[43],"some":[45],"prior":[46],"morphological":[47],"information.":[48],"The":[49],"accuracy":[50],"our":[52,94],"method":[53,95],"was":[54],"evaluated":[55],"by":[56],"comparing":[57],"results":[59,82],"obtained":[60],"base":[63],"T":[65,105],"<sub":[66,106],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[67,107],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">1</sub>":[68,108],"-weighted":[69],"data":[70],"contrast":[71],"those":[73],"FREESURFER":[75],"FSL-FIRST.":[77],"Besides":[78],"giving":[79],"very":[80],"good":[81],"from":[83],"only":[84],"one":[85],"contrast,":[86],"show":[88],"that":[89],"aspect":[92],"allows":[96],"exploiting":[97],"complementary":[99],"contributions":[100],"different":[102],"contrasts,":[103,113],"like":[104],"diffusion":[110],"tensor":[111],"(DT)":[112],"order":[115],"to":[116],"provide":[117],"more":[119],"robust":[120],"segmentation.":[121]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
