{"id":"https://openalex.org/W2118056016","doi":"https://doi.org/10.1109/isbi.2010.5490286","title":"Resolving clustered worms via probabilistic shape models","display_name":"Resolving clustered worms via probabilistic shape models","publication_year":2010,"publication_date":"2010-04-01","ids":{"openalex":"https://openalex.org/W2118056016","doi":"https://doi.org/10.1109/isbi.2010.5490286","mag":"2118056016","pmid":"https://pubmed.ncbi.nlm.nih.gov/21383863"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2010.5490286","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2010.5490286","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/1721.1/62814","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028372092","display_name":"Carolina W\u00e4hlby","orcid":"https://orcid.org/0000-0002-4139-7003"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Carolina Wahlby","raw_affiliation_strings":["Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA","Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA","institution_ids":["https://openalex.org/I107606265"]},{"raw_affiliation_string":"Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063831080","display_name":"Tammy Riklin Raviv","orcid":"https://orcid.org/0000-0003-2532-5875"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tammy Riklin-Raviv","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, USA","Computer Science and Artificial Intelligence Laboratory,#R#          MIT, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory,#R#          MIT, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033021666","display_name":"Vebjorn Ljosa","orcid":null},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vebjorn Ljosa","raw_affiliation_strings":["Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA","institution_ids":["https://openalex.org/I107606265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055799155","display_name":"Annie L. Conery","orcid":"https://orcid.org/0009-0009-1400-3468"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Annie L. Conery","raw_affiliation_strings":["Department of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA","Dept. of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA","institution_ids":[]},{"raw_affiliation_string":"Dept. of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081763875","display_name":"Polina Golland","orcid":"https://orcid.org/0000-0003-2516-731X"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Polina Golland","raw_affiliation_strings":["Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, USA","Computer Science and Artificial Intelligence Laboratory,#R#          MIT, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory, MIT, Cambridge, MA, USA","institution_ids":[]},{"raw_affiliation_string":"Computer Science and Artificial Intelligence Laboratory,#R#          MIT, Cambridge, MA, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091268228","display_name":"Frederick M. Ausubel","orcid":"https://orcid.org/0000-0002-6927-8460"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Frederick M. Ausubel","raw_affiliation_strings":["Department of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA","Dept. of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA","institution_ids":[]},{"raw_affiliation_string":"Dept. of Molecular Biology and Center for Computational and Integrative Biology, MGH, Boston, MA, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052473265","display_name":"Anne E. Carpenter","orcid":"https://orcid.org/0000-0003-1555-8261"},"institutions":[{"id":"https://openalex.org/I107606265","display_name":"Broad Institute","ror":"https://ror.org/05a0ya142","country_code":"US","type":"funder","lineage":["https://openalex.org/I107606265"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anne E. Carpenter","raw_affiliation_strings":["Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA"],"affiliations":[{"raw_affiliation_string":"Imaging Platform, Broad Institute of MIT and Harvard, Cambridge, MA, USA","institution_ids":["https://openalex.org/I107606265"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5028372092"],"corresponding_institution_ids":["https://openalex.org/I107606265"],"apc_list":null,"apc_paid":null,"fwci":1.116,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.74883411,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"2010","issue":"14-17 April 2010","first_page":"552","last_page":"555"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10676","display_name":"Genetics, Aging, and Longevity in Model Organisms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1302","display_name":"Aging"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.6689791083335876},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6443372368812561},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5935207009315491},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5384606719017029},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.5118438601493835},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4978034496307373},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4881041944026947},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.47993379831314087},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4709145724773407},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.46539270877838135},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.4398801028728485},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4028033912181854},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3607955873012543},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2830893397331238}],"concepts":[{"id":"https://openalex.org/C2778944004","wikidata":"https://www.wikidata.org/wiki/Q91703","display_name":"Caenorhabditis elegans","level":3,"score":0.6689791083335876},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6443372368812561},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5935207009315491},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5384606719017029},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.5118438601493835},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4978034496307373},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4881041944026947},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.47993379831314087},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4709145724773407},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.46539270877838135},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.4398801028728485},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4028033912181854},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3607955873012543},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2830893397331238},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1109/isbi.2010.5490286","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2010.5490286","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},{"id":"pmid:21383863","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/21383863","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings. IEEE International Symposium on Biomedical Imaging","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.178.2287","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.178.2287","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.ljosa.com/%7Eljosa/publications/wahlby_isbi_2010.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.207.8107","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.207.8107","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.broad.mit.edu/%7Eanne/publications/45-Wahlby_ISBI_2010.pdf","raw_type":"text"},{"id":"pmh:oai:dspace.mit.edu:1721.1/62814","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/62814","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"MIT web domain","raw_type":"http://purl.org/eprint/type/ConferencePaper"},{"id":"pmh:oai:pubmedcentral.nih.gov:3048333","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3048333","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Proc IEEE Int Symp Biomed Imaging","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:dspace.mit.edu:1721.1/62814","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/62814","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"MIT web domain","raw_type":"http://purl.org/eprint/type/ConferencePaper"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W1524568302","https://openalex.org/W1967609107","https://openalex.org/W2003599098","https://openalex.org/W2004369799","https://openalex.org/W2038952578","https://openalex.org/W2091733078","https://openalex.org/W2092693116","https://openalex.org/W2095785516","https://openalex.org/W2100939012","https://openalex.org/W2115010963","https://openalex.org/W2124260943","https://openalex.org/W2134927549","https://openalex.org/W2137659599","https://openalex.org/W2142254043","https://openalex.org/W2149404019","https://openalex.org/W2167338900","https://openalex.org/W4237942293","https://openalex.org/W4301885865","https://openalex.org/W6631369904"],"related_works":["https://openalex.org/W4313474347","https://openalex.org/W2993659554","https://openalex.org/W4384347930","https://openalex.org/W2183871674","https://openalex.org/W390558816","https://openalex.org/W4385516583","https://openalex.org/W978202925","https://openalex.org/W3131791460","https://openalex.org/W2356164561","https://openalex.org/W3170225129"],"abstract_inverted_index":{"The":[0,82],"roundworm":[1],"Caenorhabditis":[2],"elegans":[3,73],"is":[4],"an":[5],"effective":[6],"model":[7],"system":[8],"for":[9,67],"biological":[10],"processes":[11],"such":[12,39],"as":[13],"immunity,":[14],"behavior,":[15],"and":[16,25,93],"metabolism.":[17],"Robotic":[18],"sample":[19],"preparation":[20],"together":[21],"with":[22],"automated":[23],"microscopy":[24,80],"image":[26],"analysis":[27],"has":[28],"recently":[29],"enabled":[30],"high-throughput":[31,79],"screening":[32],"experiments":[33,40],"using":[34],"C.":[35,72],"elegans.":[36],"So":[37],"far,":[38],"have":[41],"been":[42],"limited":[43],"to":[44,48,54],"per-image":[45],"measurements":[46],"due":[47],"the":[49,52,68,86,94],"tendency":[50],"of":[51,70,76,88,96],"worms":[53,77],"cluster,":[55],"which":[56],"prevents":[57],"extracting":[58],"features":[59],"from":[60,74],"individual":[61,71],"animals.We":[62],"present":[63],"a":[64,89,97],"novel":[65],"approach":[66],"extraction":[69],"clusters":[75],"in":[78],"images.":[81],"key":[83],"ideas":[84],"are":[85,105],"construction":[87],"low-dimensional":[90],"shape-descriptor":[91],"space":[92],"definition":[95],"probability":[98],"measure":[99],"on":[100],"it.":[101],"Promising":[102],"segmentation":[103],"results":[104],"shown.":[106]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
