{"id":"https://openalex.org/W2141480762","doi":"https://doi.org/10.1109/isbi.2010.5490269","title":"5-D imaging and parallel automated analysis of cellular events in living immune tissue microenvironments","display_name":"5-D imaging and parallel automated analysis of cellular events in living immune tissue microenvironments","publication_year":2010,"publication_date":"2010-01-01","ids":{"openalex":"https://openalex.org/W2141480762","doi":"https://doi.org/10.1109/isbi.2010.5490269","mag":"2141480762"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2010.5490269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2010.5490269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065263704","display_name":"Arunachalam Narayanaswamy","orcid":"https://orcid.org/0000-0002-0775-4070"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"A. Narayanaswamy","raw_affiliation_strings":["Rensselaer Polytechnic Institute, Troy, NY, USA","Rensselaer Polytechnic Institute Troy, NY, USA"],"affiliations":[{"raw_affiliation_string":"Rensselaer Polytechnic Institute, Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Rensselaer Polytechnic Institute Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053597082","display_name":"Ena Ladi","orcid":null},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Ladi","raw_affiliation_strings":["University of California, Berkeley, CA, USA","University of California\u2010Berkeley USA"],"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"University of California\u2010Berkeley USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053211372","display_name":"Yousef Al\u2010Kofahi","orcid":"https://orcid.org/0000-0001-6093-6001"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Y. Al-Kofahi","raw_affiliation_strings":["Rensselaer Polytechnic Institute, Troy, NY, USA","Rensselaer Polytechnic Institute Troy, NY, USA"],"affiliations":[{"raw_affiliation_string":"Rensselaer Polytechnic Institute, Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Rensselaer Polytechnic Institute Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061279239","display_name":"Yaobin Chen","orcid":"https://orcid.org/0000-0002-9875-4083"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Y. Chen","raw_affiliation_strings":["Rensselaer Polytechnic Institute, Troy, NY, USA","Rensselaer Polytechnic Institute Troy, NY, USA"],"affiliations":[{"raw_affiliation_string":"Rensselaer Polytechnic Institute, Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Rensselaer Polytechnic Institute Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049601801","display_name":"Christopher D. Carothers","orcid":"https://orcid.org/0000-0002-8862-9844"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Carothers","raw_affiliation_strings":["Rensselaer Polytechnic Institute, Troy, NY, USA","Rensselaer Polytechnic Institute Troy, NY, USA"],"affiliations":[{"raw_affiliation_string":"Rensselaer Polytechnic Institute, Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Rensselaer Polytechnic Institute Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079977765","display_name":"Ellen A. Robey","orcid":"https://orcid.org/0000-0002-3630-5266"},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Robey","raw_affiliation_strings":["University of California, Berkeley, CA, USA","University of California\u2010Berkeley USA"],"affiliations":[{"raw_affiliation_string":"University of California, Berkeley, CA, USA","institution_ids":["https://openalex.org/I95457486"]},{"raw_affiliation_string":"University of California\u2010Berkeley USA","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5090480130","display_name":"Badrinath Roysam","orcid":"https://orcid.org/0000-0002-8310-1389"},"institutions":[{"id":"https://openalex.org/I165799507","display_name":"Rensselaer Polytechnic Institute","ror":"https://ror.org/01rtyzb94","country_code":"US","type":"education","lineage":["https://openalex.org/I165799507"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B. Roysam","raw_affiliation_strings":["Rensselaer Polytechnic Institute, Troy, NY, USA","Rensselaer Polytechnic Institute Troy, NY, USA"],"affiliations":[{"raw_affiliation_string":"Rensselaer Polytechnic Institute, Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]},{"raw_affiliation_string":"Rensselaer Polytechnic Institute Troy, NY, USA","institution_ids":["https://openalex.org/I165799507"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5065263704"],"corresponding_institution_ids":["https://openalex.org/I165799507"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.15657694,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"26","issue":null,"first_page":"1435","last_page":"1438"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11313","display_name":"Immune cells in cancer","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7288114428520203},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.7155230045318604},{"id":"https://openalex.org/keywords/homogeneous","display_name":"Homogeneous","score":0.520267128944397},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.46150970458984375},{"id":"https://openalex.org/keywords/living-cell","display_name":"Living cell","score":0.44229960441589355},{"id":"https://openalex.org/keywords/artificial-immune-system","display_name":"Artificial immune system","score":0.41143208742141724},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38569366931915283},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.38414883613586426},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.30559998750686646},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1578405499458313},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15351521968841553},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08828160166740417}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7288114428520203},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.7155230045318604},{"id":"https://openalex.org/C66882249","wikidata":"https://www.wikidata.org/wiki/Q169336","display_name":"Homogeneous","level":2,"score":0.520267128944397},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.46150970458984375},{"id":"https://openalex.org/C2984801823","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Living cell","level":2,"score":0.44229960441589355},{"id":"https://openalex.org/C93768804","wikidata":"https://www.wikidata.org/wiki/Q2518735","display_name":"Artificial immune system","level":2,"score":0.41143208742141724},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38569366931915283},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.38414883613586426},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.30559998750686646},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1578405499458313},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15351521968841553},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08828160166740417},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2010.5490269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2010.5490269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1641688713","https://openalex.org/W2038731209","https://openalex.org/W2070306500","https://openalex.org/W2094285977","https://openalex.org/W2096150097","https://openalex.org/W2142332605","https://openalex.org/W2167551229"],"related_works":["https://openalex.org/W2046435967","https://openalex.org/W4231775656","https://openalex.org/W1598955744","https://openalex.org/W4384111961","https://openalex.org/W2072810146","https://openalex.org/W2383646825","https://openalex.org/W2144602163","https://openalex.org/W2371018915","https://openalex.org/W2204136089","https://openalex.org/W2354191502"],"abstract_inverted_index":{"The":[0],"mammalian":[1],"immune":[2],"system":[3],"consists":[4],"of":[5,26,31],"vital":[6],"tissue":[7,44,82],"microenvironments":[8],"that":[9],"exhibit":[10],"remarkable":[11],"structural":[12],"complexity":[13],"and":[14,35,57,64,71,75],"dynamic":[15,39],"cellular":[16],"behaviors.":[17],"It":[18],"is":[19],"now":[20],"possible":[21],"to":[22,62,77,80],"acquire":[23],"time-lapse":[24],"series":[25],"multi-channel":[27],"three":[28],"dimensional":[29],"images":[30],"multiple":[32],"cell":[33],"types":[34],"vasculature":[36],"simultaneously,":[37],"revealing":[38],"events":[40,67,79],"in":[41],"their":[42,81],"living":[43],"context.":[45,83],"This":[46],"talk":[47],"will":[48],"describe":[49],"automated":[50],"image":[51],"analysis":[52],"algorithms,":[53],"parallel":[54],"computation":[55],"methods,":[56],"large-scale":[58],"edit-based":[59],"validation":[60],"methods":[61,76],"detect":[63],"quantify":[65],"key":[66],"such":[68],"as":[69],"homogeneous":[70],"heterogeneous":[72],"cell-cell":[73],"interactions,":[74],"map":[78]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
