{"id":"https://openalex.org/W2132457274","doi":"https://doi.org/10.1109/isbi.2009.5193269","title":"Segmentation of anatomo-functional 3D post mortem data using a MRI-based 3D digital atlas: Transgenic mouse brains study","display_name":"Segmentation of anatomo-functional 3D post mortem data using a MRI-based 3D digital atlas: Transgenic mouse brains study","publication_year":2009,"publication_date":"2009-06-01","ids":{"openalex":"https://openalex.org/W2132457274","doi":"https://doi.org/10.1109/isbi.2009.5193269","mag":"2132457274"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2009.5193269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5054732577","display_name":"Jessica Lebenberg","orcid":"https://orcid.org/0000-0002-5403-8288"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I4210097138","display_name":"CEA Paris-Saclay - Etablissement de Fontenay-aux-roses","ror":"https://ror.org/010j2gw05","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210097138","https://openalex.org/I4210128565"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"J. Lebenberg","raw_affiliation_strings":["Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France"],"affiliations":[{"raw_affiliation_string":"Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I2738703131","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089008618","display_name":"Anne\u2010Sophie H\u00e9rard","orcid":"https://orcid.org/0000-0001-8260-9618"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210097138","display_name":"CEA Paris-Saclay - Etablissement de Fontenay-aux-roses","ror":"https://ror.org/010j2gw05","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210097138","https://openalex.org/I4210128565"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"A.-S. Herard","raw_affiliation_strings":["Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France"],"affiliations":[{"raw_affiliation_string":"Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I2738703131","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073269050","display_name":"Annick Dubois","orcid":"https://orcid.org/0000-0002-3646-3811"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I4210097138","display_name":"CEA Paris-Saclay - Etablissement de Fontenay-aux-roses","ror":"https://ror.org/010j2gw05","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210097138","https://openalex.org/I4210128565"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"A. Dubois","raw_affiliation_strings":["Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France"],"affiliations":[{"raw_affiliation_string":"Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I2738703131","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003701057","display_name":"Marc Dh\u00e9nain","orcid":"https://orcid.org/0000-0001-8804-4101"},"institutions":[{"id":"https://openalex.org/I4210097138","display_name":"CEA Paris-Saclay - Etablissement de Fontenay-aux-roses","ror":"https://ror.org/010j2gw05","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210097138","https://openalex.org/I4210128565"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M. Dhenain","raw_affiliation_strings":["Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France"],"affiliations":[{"raw_affiliation_string":"Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I2738703131","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111935922","display_name":"P. Hantraye","orcid":null},"institutions":[{"id":"https://openalex.org/I4210097138","display_name":"CEA Paris-Saclay - Etablissement de Fontenay-aux-roses","ror":"https://ror.org/010j2gw05","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210097138","https://openalex.org/I4210128565"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"P. Hantraye","raw_affiliation_strings":["Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France"],"affiliations":[{"raw_affiliation_string":"Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I2738703131","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078842273","display_name":"Vincent Frouin","orcid":"https://orcid.org/0000-0001-9360-6623"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"V. Frouin","raw_affiliation_strings":["SCSR, CEA-DSV-I2BM, Evry, France"],"affiliations":[{"raw_affiliation_string":"SCSR, CEA-DSV-I2BM, Evry, France","institution_ids":["https://openalex.org/I2738703131"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113595631","display_name":"Thierry Delzescaux","orcid":"https://orcid.org/0000-0002-6527-7946"},"institutions":[{"id":"https://openalex.org/I4210097138","display_name":"CEA Paris-Saclay - Etablissement de Fontenay-aux-roses","ror":"https://ror.org/010j2gw05","country_code":"FR","type":"government","lineage":["https://openalex.org/I2738703131","https://openalex.org/I277688954","https://openalex.org/I4210097138","https://openalex.org/I4210128565"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"T. Delzescaux","raw_affiliation_strings":["Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France"],"affiliations":[{"raw_affiliation_string":"Fontenay-aux-Roses, MIRCen-LMN-CNRS-URACEA-DSV-I2BM, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"MIRCen-LMN-CNRS-URA 2210, CEA-DSV-I2BM, Fontenay-aux-Roses, France","institution_ids":["https://openalex.org/I4210097138","https://openalex.org/I2738703131","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5054732577"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I4210097138"],"apc_list":null,"apc_paid":null,"fwci":0.1312,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.54478243,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"63","issue":null,"first_page":"1182","last_page":"1185"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10269","display_name":"Epigenetics and DNA Methylation","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5378656983375549},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5294368267059326},{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.5175668597221375},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.42397454380989075},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23023319244384766},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.10063931345939636}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5378656983375549},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5294368267059326},{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.5175668597221375},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.42397454380989075},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23023319244384766},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.10063931345939636}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2009.5193269","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193269","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":9,"referenced_works":["https://openalex.org/W29045668","https://openalex.org/W1973872048","https://openalex.org/W1983239326","https://openalex.org/W2006899773","https://openalex.org/W2013158197","https://openalex.org/W2014148850","https://openalex.org/W2078237160","https://openalex.org/W2131051578","https://openalex.org/W2157380596"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2748952813","https://openalex.org/W2314146950","https://openalex.org/W2011187995","https://openalex.org/W2373521488","https://openalex.org/W2324878645","https://openalex.org/W2803101231","https://openalex.org/W4284509","https://openalex.org/W4393084406","https://openalex.org/W606911313"],"abstract_inverted_index":{"Many":[0],"analyses":[1],"in":[2,151],"neurosciences":[3],"are":[4],"carried":[5],"out":[6],"on":[7,20,55,64,79,101],"histological":[8],"and":[9,12,108,117,126,150],"autoradiographic":[10],"datasets":[11,148],"performed":[13,122],"by":[14,123],"manually":[15],"drawing":[16],"regions":[17],"of":[18,58,105],"interest":[19],"these":[21],"2D":[22],"<i":[23,26,43,46,66,69,80,83,141,144],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[24,27,44,47,67,70,81,84,142,145],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">post</i>":[25,45,68,82,143],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">mortem</i>":[28,48,71,85,146],"data.":[29,72],"Such":[30],"task":[31],"being":[32],"time-consuming,":[33],"we":[34],"propose":[35],"an":[36],"automated":[37],"segmentation":[38],"strategy":[39],"to":[40,92,136],"analyze":[41],"3D":[42,61],"brain":[49],"images.":[50],"This":[51],"method":[52,98],"is":[53,134],"based":[54],"the":[56,76,94],"co-registration":[57],"a":[59,118,152],"MRI-based":[60],"digital":[62,95],"atlas":[63,125],"3D-reconstructed":[65],"We":[73,87],"first":[74],"deformed":[75],"original":[77],"MRI":[78],"volumes.":[86],"then":[88],"applied":[89],"deformation":[90],"parameters":[91],"warp":[93],"atlas.":[96],"The":[97],"was":[99,114,121],"tested":[100],"APP/PS1":[102],"mouse":[103,147],"models":[104],"Alzheimer's":[106],"disease":[107],"PS1":[109],"control":[110],"littermates.":[111],"Its":[112],"reliability":[113],"qualitatively":[115],"evaluated":[116],"quantitative":[119],"assessment":[120],"comparing":[124],"manual":[127],"segmentations.":[128],"Our":[129],"results":[130],"show":[131],"this":[132],"approach":[133],"promising":[135],"investigate":[137],"at":[138],"organ":[139],"scale":[140],"faster":[149],"more":[153],"robust":[154],"manner":[155],"than":[156],"with":[157],"classical":[158],"methods.":[159]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
