{"id":"https://openalex.org/W2099339077","doi":"https://doi.org/10.1109/isbi.2009.5193253","title":"3D spatial drift correction using Kalman filtering for fluorescence based imaging","display_name":"3D spatial drift correction using Kalman filtering for fluorescence based imaging","publication_year":2009,"publication_date":"2009-06-01","ids":{"openalex":"https://openalex.org/W2099339077","doi":"https://doi.org/10.1109/isbi.2009.5193253","mag":"2099339077"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2009.5193253","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193253","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068413883","display_name":"Thierry Dorval","orcid":null},"institutions":[{"id":"https://openalex.org/I136761661","display_name":"Institut Pasteur Korea","ror":"https://ror.org/04t0zhb48","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I136761661"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"T. Dorval","raw_affiliation_strings":["Image Mining Group","Image Mining Group, Institut Pasteur Korea, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image Mining Group","institution_ids":[]},{"raw_affiliation_string":"Image Mining Group, Institut Pasteur Korea, Seoul, South Korea","institution_ids":["https://openalex.org/I136761661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064874042","display_name":"CB. Moraes","orcid":null},"institutions":[{"id":"https://openalex.org/I136761661","display_name":"Institut Pasteur Korea","ror":"https://ror.org/04t0zhb48","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I136761661"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"CB. Moraes","raw_affiliation_strings":["Systems Biology of Pathogens, Institut Pasteur Korea, Seongbuk-gu, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Biology of Pathogens, Institut Pasteur Korea, Seongbuk-gu, Seoul, Korea","institution_ids":["https://openalex.org/I136761661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030199942","display_name":"Arnaud Ogier","orcid":"https://orcid.org/0000-0003-3656-9816"},"institutions":[{"id":"https://openalex.org/I136761661","display_name":"Institut Pasteur Korea","ror":"https://ror.org/04t0zhb48","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I136761661"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"A. Ogier","raw_affiliation_strings":["Image Mining Group","Image Mining Group, Institut Pasteur Korea, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image Mining Group","institution_ids":[]},{"raw_affiliation_string":"Image Mining Group, Institut Pasteur Korea, Seoul, South Korea","institution_ids":["https://openalex.org/I136761661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003997061","display_name":"Lucio Freitas","orcid":null},"institutions":[{"id":"https://openalex.org/I136761661","display_name":"Institut Pasteur Korea","ror":"https://ror.org/04t0zhb48","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I136761661"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"L.H. Freitas","raw_affiliation_strings":["Systems Biology of Pathogens, Institut Pasteur Korea, Seongbuk-gu, Seoul, Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Biology of Pathogens, Institut Pasteur Korea, Seongbuk-gu, Seoul, Korea","institution_ids":["https://openalex.org/I136761661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064234141","display_name":"Auguste Genovesio","orcid":"https://orcid.org/0000-0003-1877-5595"},"institutions":[{"id":"https://openalex.org/I136761661","display_name":"Institut Pasteur Korea","ror":"https://ror.org/04t0zhb48","country_code":"KR","type":"nonprofit","lineage":["https://openalex.org/I136761661"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"A. Genovesio","raw_affiliation_strings":["Image Mining Group","Image Mining Group, Institut Pasteur Korea, Seoul, South Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image Mining Group","institution_ids":[]},{"raw_affiliation_string":"Image Mining Group, Institut Pasteur Korea, Seoul, South Korea","institution_ids":["https://openalex.org/I136761661"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I136761661"],"apc_list":null,"apc_paid":null,"fwci":1.5043,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.8348329,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1119","last_page":"1122"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12153","display_name":"Advanced Optical Sensing Technologies","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/3105","display_name":"Instrumentation"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.7878066897392273},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.7148481607437134},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7141756415367126},{"id":"https://openalex.org/keywords/artifact","display_name":"Artifact (error)","score":0.6832696199417114},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6382728815078735},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5087316632270813},{"id":"https://openalex.org/keywords/motion-compensation","display_name":"Motion compensation","score":0.4541250765323639},{"id":"https://openalex.org/keywords/compensation","display_name":"Compensation (psychology)","score":0.4223380386829376}],"concepts":[{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.7878066897392273},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.7148481607437134},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7141756415367126},{"id":"https://openalex.org/C2779010991","wikidata":"https://www.wikidata.org/wiki/Q2720909","display_name":"Artifact (error)","level":2,"score":0.6832696199417114},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6382728815078735},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5087316632270813},{"id":"https://openalex.org/C128840427","wikidata":"https://www.wikidata.org/wiki/Q1302174","display_name":"Motion compensation","level":2,"score":0.4541250765323639},{"id":"https://openalex.org/C2780023022","wikidata":"https://www.wikidata.org/wiki/Q1338171","display_name":"Compensation (psychology)","level":2,"score":0.4223380386829376},{"id":"https://openalex.org/C11171543","wikidata":"https://www.wikidata.org/wiki/Q41630","display_name":"Psychoanalysis","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2009.5193253","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193253","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-02902013v1","is_oa":false,"landing_page_url":"https://hal.science/hal-02902013","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro (ISBI), Jun 2009, Boston, France. pp.1119-1122, &#x27E8;10.1109/ISBI.2009.5193253&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.550000011920929,"id":"https://metadata.un.org/sdg/16"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":7,"referenced_works":["https://openalex.org/W1981890682","https://openalex.org/W1985078289","https://openalex.org/W2094291523","https://openalex.org/W2105934661","https://openalex.org/W2113127660","https://openalex.org/W2571050459","https://openalex.org/W3187867541"],"related_works":["https://openalex.org/W52840052","https://openalex.org/W3162837891","https://openalex.org/W1687852313","https://openalex.org/W3029243869","https://openalex.org/W2502336004","https://openalex.org/W1741504538","https://openalex.org/W4308623176","https://openalex.org/W2019696434","https://openalex.org/W2358078963","https://openalex.org/W2023249001"],"abstract_inverted_index":{"In":[0],"this":[1],"paper":[2],"we":[3,80],"present":[4],"a":[5,60,85,94,134],"framework":[6,99],"for":[7,77],"correcting":[8],"the":[9,43,57,64,68,73,91,104,108],"spatial":[10,48],"drift":[11],"that":[12],"can":[13,29],"occur":[14],"in":[15,93],"3D":[16,110,128],"optical":[17],"fluorescence":[18],"microscopy":[19],"images.":[20,111],"These":[21],"shifts":[22],"happen":[23],"during":[24],"long":[25],"time":[26],"acquisition":[27],"and":[28,119,123],"corrupt":[30],"further":[31],"analysis.":[32],"This":[33,98,112],"artifact":[34],"has":[35],"to":[36,83,102,126],"be":[37],"taken":[38],"into":[39],"account":[40],"especially":[41],"if":[42],"application":[44],"requires":[45],"an":[46,121],"high":[47],"detection":[49],"accuracy.":[50],"Our":[51],"correction":[52,75],"method":[53,113],"is":[54,114],"based":[55],"on":[56,90,116],"use":[58],"of":[59,87],"microsphere":[61],"located":[62],"within":[63],"biological":[65],"assay.":[66],"As":[67],"bead":[69],"does":[70],"not":[71],"provide":[72],"same":[74],"quality":[76],"each":[78],"Z-slice,":[79],"propose":[81],"here,":[82],"include":[84],"level":[86],"confidence":[88],"depending":[89],"depth":[92],"Kalman":[95],"filtering":[96],"process.":[97],"allows":[100],"then":[101],"extend":[103],"motion":[105],"compensation":[106],"along":[107,131],"complete":[109],"validated":[115],"real":[117],"data":[118],"provides":[120],"easy":[122],"accurate":[124],"way":[125],"correct":[127],"images":[129],"corrupted":[130],"Z":[132],"by":[133],"XY":[135],"motion.":[136]},"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
