{"id":"https://openalex.org/W2085290664","doi":"https://doi.org/10.1109/isbi.2009.5193249","title":"Structural annotation of em images by graph cut","display_name":"Structural annotation of em images by graph cut","publication_year":2009,"publication_date":"2009-06-01","ids":{"openalex":"https://openalex.org/W2085290664","doi":"https://doi.org/10.1109/isbi.2009.5193249","mag":"2085290664"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2009.5193249","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193249","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047619963","display_name":"Hang Chang","orcid":"https://orcid.org/0000-0002-3773-6818"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hang Chang","raw_affiliation_strings":["Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","Life Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102846417","display_name":"Manfred Auer","orcid":"https://orcid.org/0000-0002-5435-9436"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Manfred Auer","raw_affiliation_strings":["Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","Life Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053749724","display_name":"Bahram Parvin","orcid":"https://orcid.org/0000-0002-6433-8006"},"institutions":[{"id":"https://openalex.org/I148283060","display_name":"Lawrence Berkeley National Laboratory","ror":"https://ror.org/02jbv0t02","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I148283060","https://openalex.org/I39565521"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bahram Parvin","raw_affiliation_strings":["Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","Life Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA"],"affiliations":[{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA","institution_ids":["https://openalex.org/I148283060"]},{"raw_affiliation_string":"Life Sciences Division, Lawrence Berkeley National Laboratory, CA 94720, USA","institution_ids":["https://openalex.org/I148283060"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5047619963"],"corresponding_institution_ids":["https://openalex.org/I148283060"],"apc_list":null,"apc_paid":null,"fwci":0.6471,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.7096605,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"1103","last_page":"1106"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.983299970626831,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12100","display_name":"Advanced Mathematical Modeling in Engineering","score":0.9506000280380249,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cut","display_name":"Cut","score":0.6455941796302795},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6031737923622131},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5098528265953064},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5067110657691956},{"id":"https://openalex.org/keywords/maximum-cut","display_name":"Maximum cut","score":0.5012178421020508},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.49854111671447754},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4710307717323303},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.4665657579898834},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44893747568130493},{"id":"https://openalex.org/keywords/gradient-descent","display_name":"Gradient descent","score":0.41245850920677185},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3876606822013855},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.19064781069755554}],"concepts":[{"id":"https://openalex.org/C5134670","wikidata":"https://www.wikidata.org/wiki/Q1626444","display_name":"Cut","level":4,"score":0.6455941796302795},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6031737923622131},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5098528265953064},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5067110657691956},{"id":"https://openalex.org/C165526019","wikidata":"https://www.wikidata.org/wiki/Q942557","display_name":"Maximum cut","level":3,"score":0.5012178421020508},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.49854111671447754},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4710307717323303},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.4665657579898834},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44893747568130493},{"id":"https://openalex.org/C153258448","wikidata":"https://www.wikidata.org/wiki/Q1199743","display_name":"Gradient descent","level":3,"score":0.41245850920677185},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3876606822013855},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.19064781069755554},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2009.5193249","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193249","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.8600000143051147}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1563007904","https://openalex.org/W1979646836","https://openalex.org/W2020999234","https://openalex.org/W2097654925","https://openalex.org/W2105365768","https://openalex.org/W2114931104","https://openalex.org/W2116040950","https://openalex.org/W2143516773","https://openalex.org/W2165734775","https://openalex.org/W2170696666","https://openalex.org/W6611357420"],"related_works":["https://openalex.org/W2942946217","https://openalex.org/W1522196789","https://openalex.org/W2129497110","https://openalex.org/W1588356204","https://openalex.org/W2162366888","https://openalex.org/W2109407305","https://openalex.org/W2594460529","https://openalex.org/W2511878883","https://openalex.org/W2032319136","https://openalex.org/W2897997384"],"abstract_inverted_index":{"Biological":[0],"images":[1,169],"have":[2],"the":[3,32,83,91,96,101,108,120,127,134,137,140,159,163],"potential":[4],"to":[5,14,30,107,158,173],"reveal":[6],"complex":[7],"signatures":[8],"that":[9],"may":[10],"not":[11],"be":[12],"amenable":[13],"morphological":[15],"modeling":[16],"in":[17,81],"terms":[18],"of":[19,34,41,69,95,139],"shape,":[20],"location,":[21],"texture,":[22],"and":[23,43,57,123,144,151,170],"color.":[24],"An":[25],"effective":[26],"analytical":[27],"method":[28,135,143,164],"is":[29,64,88,104,114,124,156,165],"characterize":[31],"composition":[33],"a":[35,48,112,132],"specimen":[36],"based":[37],"on":[38,119,167],"user-defined":[39],"patterns":[40,68,75],"texture":[42],"contrast":[44],"formation.":[45],"However,":[46],"such":[47],"simple":[49],"requirement":[50],"demands":[51],"an":[52,60,77],"improved":[53],"model":[54,63,80],"for":[55,66],"stability":[56],"robustness.":[58],"Here,":[59],"interactive":[61],"computational":[62,152],"introduced":[65],"learning":[67],"interest":[70],"by":[71,90,176],"example.":[72],"The":[73,154],"learned":[74],"bound":[76],"active":[78],"contour":[79],"which":[82],"traditional":[84],"gradient":[85],"descent":[86],"optimization":[87,94],"replaced":[89],"more":[92],"efficient":[93],"graph":[97,113,128,145],"cut":[98,129,146],"methods.":[99],"First,":[100],"energy":[102,121],"function":[103,122],"defined":[105],"according":[106],"curve":[109],"evolution.":[110],"Next,":[111],"constructed":[115],"with":[116,126],"weighted":[117],"edges":[118],"optimized":[125],"algorithm.":[130],"As":[131],"result,":[133],"combines":[136],"advantages":[138],"level":[141],"set":[142],"algorithm,":[147],"i.e.,":[148],"ldquotopologicalrdquo":[149],"invariance":[150],"efficiency.":[153],"technique":[155],"extended":[157],"multiphase":[160],"segmentation":[161],"problem;":[162],"validated":[166],"synthetic":[168],"then":[171],"applied":[172],"specimens":[174],"imaged":[175],"transmission":[177],"electron":[178],"microscopy(TEM).":[179]},"counts_by_year":[{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
