{"id":"https://openalex.org/W2107981869","doi":"https://doi.org/10.1109/isbi.2009.5193093","title":"Segmentation of rodent brains from MRI based on a novel statistical structure prediction method","display_name":"Segmentation of rodent brains from MRI based on a novel statistical structure prediction method","publication_year":2009,"publication_date":"2009-06-01","ids":{"openalex":"https://openalex.org/W2107981869","doi":"https://doi.org/10.1109/isbi.2009.5193093","mag":"2107981869"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2009.5193093","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193093","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026395073","display_name":"Jinghao Zhou","orcid":"https://orcid.org/0000-0002-7744-0405"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]},{"id":"https://openalex.org/I4390039325","display_name":"Rutgers Cancer Institute","ror":"https://ror.org/0060x3y55","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I102322142","https://openalex.org/I4390039302","https://openalex.org/I4390039325"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jinghao Zhou","raw_affiliation_strings":["CBIM, Rutgers, State University of New Jersey, Piscataway, NJ, USA","Radiation Oncology, The Cancer Institute of New Jersey, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, New Brunswick, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CBIM, Rutgers, State University of New Jersey, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Radiation Oncology, The Cancer Institute of New Jersey, Robert Wood Johnson Medical School, University of Medicine and Dentistry of New Jersey, New Brunswick, NJ, USA","institution_ids":["https://openalex.org/I102322142","https://openalex.org/I4390039325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113944166","display_name":"Sukmoon Chang","orcid":null},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sukmoon Chang","raw_affiliation_strings":["CBIM, Rutgers, State University of New Jersey, Piscataway, NJ, USA","Computer Science, Capital College, Pennslyvania State University, Middletown, PA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CBIM, Rutgers, State University of New Jersey, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]},{"raw_affiliation_string":"Computer Science, Capital College, Pennslyvania State University, Middletown, PA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066553616","display_name":"Shaoting Zhang","orcid":"https://orcid.org/0000-0002-8719-448X"},"institutions":[{"id":"https://openalex.org/I102322142","display_name":"Rutgers, The State University of New Jersey","ror":"https://ror.org/05vt9qd57","country_code":"US","type":"education","lineage":["https://openalex.org/I102322142"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shaoting Zhang","raw_affiliation_strings":["CBIM, Rutgers, State University of New Jersey, Piscataway, NJ, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CBIM, Rutgers, State University of New Jersey, Piscataway, NJ, USA","institution_ids":["https://openalex.org/I102322142"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008386954","display_name":"George D. Pappas","orcid":"https://orcid.org/0000-0003-1762-4963"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"George Pappas","raw_affiliation_strings":["Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086522965","display_name":"Michael Michaelides","orcid":"https://orcid.org/0000-0003-0398-4917"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Michaelides","raw_affiliation_strings":["Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000586747","display_name":"Foteini Delis","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Foteini Delis","raw_affiliation_strings":["Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002969658","display_name":"Nora D. Volkow","orcid":"https://orcid.org/0000-0001-6668-0908"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nora Volkow","raw_affiliation_strings":["Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112101927","display_name":"Panayotis K. Thanos","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Panayotis Thanos","raw_affiliation_strings":["Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109600054","display_name":"Dimitris Metaxas","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dimitris Metaxas","raw_affiliation_strings":["Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Behavior Neuropharmacology and Neuroimaging Laboratory, Medical Department, Brockhaven National Laboratory, Upton, NY, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"62","issue":null,"first_page":"498","last_page":"501"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10824","display_name":"Image Retrieval and Classification Techniques","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.8261247873306274},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7172134518623352},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6967951059341431},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.6115661859512329},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.561911940574646},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5305564403533936},{"id":"https://openalex.org/keywords/brain-anatomy","display_name":"Brain anatomy","score":0.46531370282173157},{"id":"https://openalex.org/keywords/brain-morphometry","display_name":"Brain morphometry","score":0.4637848138809204},{"id":"https://openalex.org/keywords/brain-structure-and-function","display_name":"Brain Structure and Function","score":0.46016475558280945},{"id":"https://openalex.org/keywords/brain-function","display_name":"Brain function","score":0.413217693567276},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3999771177768707},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.36655521392822266},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.25734472274780273},{"id":"https://openalex.org/keywords/magnetic-resonance-imaging","display_name":"Magnetic resonance imaging","score":0.21691831946372986},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1172156035900116},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09967061877250671}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.8261247873306274},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7172134518623352},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6967951059341431},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.6115661859512329},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.561911940574646},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5305564403533936},{"id":"https://openalex.org/C2988762625","wikidata":"https://www.wikidata.org/wiki/Q492038","display_name":"Brain anatomy","level":3,"score":0.46531370282173157},{"id":"https://openalex.org/C145940234","wikidata":"https://www.wikidata.org/wiki/Q4955830","display_name":"Brain morphometry","level":3,"score":0.4637848138809204},{"id":"https://openalex.org/C2779632907","wikidata":"https://www.wikidata.org/wiki/Q13444883","display_name":"Brain Structure and Function","level":3,"score":0.46016475558280945},{"id":"https://openalex.org/C3018390542","wikidata":"https://www.wikidata.org/wiki/Q1073","display_name":"Brain function","level":2,"score":0.413217693567276},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3999771177768707},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.36655521392822266},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.25734472274780273},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.21691831946372986},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1172156035900116},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09967061877250671},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2009.5193093","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2009.5193093","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.377.5070","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.377.5070","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.research.rutgers.edu/~shaoting/paper/ISBI09-seg.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1487987997","https://openalex.org/W1513013675","https://openalex.org/W1554944419","https://openalex.org/W1995796138","https://openalex.org/W2027955893","https://openalex.org/W2038952578","https://openalex.org/W2069303738","https://openalex.org/W2101524669","https://openalex.org/W2107079101","https://openalex.org/W2107779001","https://openalex.org/W2116087808","https://openalex.org/W2122632052","https://openalex.org/W2145622106","https://openalex.org/W2147646630","https://openalex.org/W2167338900","https://openalex.org/W2171033594","https://openalex.org/W2215365459","https://openalex.org/W2616101183"],"related_works":["https://openalex.org/W1555964684","https://openalex.org/W4225011869","https://openalex.org/W1967918840","https://openalex.org/W2470187499","https://openalex.org/W4283695776","https://openalex.org/W2976981404","https://openalex.org/W3017668461","https://openalex.org/W2998261935","https://openalex.org/W2237805755","https://openalex.org/W4233049899"],"abstract_inverted_index":{"Functional":[0],"segmentation":[1,50,104],"of":[2,20,43,59,68,71,93,105,120,134],"brain":[3,22,38,91,108,121],"images":[4],"is":[5],"important":[6],"in":[7,16,32,37,52],"understating":[8],"the":[9,26,34,66,69,74,90,100,117,135,143],"relationships":[10],"between":[11],"anatomy":[12],"and":[13,88],"mental":[14],"diseases":[15],"brains.":[17],"Volumetric":[18],"analysis":[19],"various":[21,49],"structures":[23,70,92,122],"such":[24],"as":[25,40],"cerebellum":[27],"plays":[28],"a":[29,41,62,83,125],"critical":[30],"role":[31],"studying":[33],"structural":[35],"changes":[36,119],"regions":[39],"function":[42],"development,":[44],"trauma,":[45],"or":[46],"neurodegeneration.":[47],"Although":[48],"methods":[51],"clinical":[53],"studies":[54],"have":[55],"been":[56],"proposed,":[57],"most":[58],"them":[60],"require":[61],"priori":[63],"knowledge":[64],"about":[65],"locations":[67],"interest,":[72],"preventing":[73],"fully":[75,101],"automatic":[76,102],"segmentation.":[77],"In":[78],"this":[79],"paper,":[80],"we":[81],"present":[82],"novel":[84,126],"method":[85,113,137],"for":[86,99],"detecting":[87,116],"locating":[89],"interest":[94],"that":[95],"can":[96],"be":[97],"used":[98],"functional":[103],"2D":[106],"rodent":[107],"MR":[109],"images.":[110],"The":[111,130],"presented":[112],"focuses":[114],"on":[115,124],"topological":[118],"based":[123],"area":[127],"ratio":[128],"criteria.":[129],"mean":[131],"successful":[132],"rate":[133],"detection":[136],"shows":[138],"89.4%":[139],"accuracy":[140],"compared":[141],"to":[142],"expert-identified":[144],"ground":[145],"truth.":[146]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
