{"id":"https://openalex.org/W2123395075","doi":"https://doi.org/10.1109/isbi.2008.4540957","title":"Building an atlas of hippocampal subfields using postmortem MRI","display_name":"Building an atlas of hippocampal subfields using postmortem MRI","publication_year":2008,"publication_date":"2008-05-01","ids":{"openalex":"https://openalex.org/W2123395075","doi":"https://doi.org/10.1109/isbi.2008.4540957","mag":"2123395075"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2008.4540957","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2008.4540957","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5059550368","display_name":"Paul A. Yushkevich","orcid":"https://orcid.org/0000-0001-8543-4016"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Paul A. Yushkevich","raw_affiliation_strings":["Department of Radiology, Philadelphia, PA, USA","Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I922845939"]},{"raw_affiliation_string":"Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016551394","display_name":"Brian Avants","orcid":"https://orcid.org/0000-0002-4212-3362"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian B. Avants","raw_affiliation_strings":["Department of Radiology, Philadelphia, PA, USA","Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I922845939"]},{"raw_affiliation_string":"Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090695166","display_name":"John Pluta","orcid":"https://orcid.org/0000-0002-8941-6242"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Pluta","raw_affiliation_strings":["Department of Neurology, University of Pennsylvania, Philadelphia, PA, USA","Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"Department of Neurology, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028289572","display_name":"David Minkoff","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Minkoff","raw_affiliation_strings":["University of Pennsylvania, Philadelphia, PA, US","Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"University of Pennsylvania, Philadelphia, PA, US","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019161876","display_name":"Stephen Pickup","orcid":"https://orcid.org/0000-0002-7016-8648"},"institutions":[{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stephen Pickup","raw_affiliation_strings":["Department of Radiology, Philadelphia, PA, USA","Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I922845939"]},{"raw_affiliation_string":"Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086688746","display_name":"Weixia Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]},{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weixia Liu","raw_affiliation_strings":["Department of Radiology, Philadelphia, PA, USA","Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I922845939"]},{"raw_affiliation_string":"Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058192322","display_name":"John A. Detre","orcid":"https://orcid.org/0000-0002-8115-6343"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John A. Detre","raw_affiliation_strings":["University of Pennsylvania, Philadelphia, PA, US","Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA"],"affiliations":[{"raw_affiliation_string":"University of Pennsylvania, Philadelphia, PA, US","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Depts. of Radiol., Univ. of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047108669","display_name":"Murray Grossman","orcid":"https://orcid.org/0000-0002-7447-6218"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Murray Grossman","raw_affiliation_strings":["Department of Neurology, University of Pennsylvania, Philadelphia, PA, USA","Department of Neurology, University of Pennsylvania, Philadelphia, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Neurology, University of Pennsylvania, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Department of Neurology, University of Pennsylvania, Philadelphia, U.S.A","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005451810","display_name":"James C. Gee","orcid":"https://orcid.org/0000-0002-2258-0187"},"institutions":[{"id":"https://openalex.org/I922845939","display_name":"Philadelphia University","ror":"https://ror.org/03zzmyz63","country_code":"US","type":"education","lineage":["https://openalex.org/I922845939"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James C. Gee","raw_affiliation_strings":["Department of Radiology, Philadelphia, PA, USA","Department of Radiology, University of Pennsylvania, Philadelphia, U.S.A"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, Philadelphia, PA, USA","institution_ids":["https://openalex.org/I922845939"]},{"raw_affiliation_string":"Department of Radiology, University of Pennsylvania, Philadelphia, U.S.A","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5059550368"],"corresponding_institution_ids":["https://openalex.org/I79576946","https://openalex.org/I922845939"],"apc_list":null,"apc_paid":null,"fwci":0.3512,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.65810776,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"3","issue":null,"first_page":"161","last_page":"164"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10077","display_name":"Neuroscience and Neuropharmacology Research","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9818999767303467,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/atlas","display_name":"Atlas (anatomy)","score":0.7552496790885925},{"id":"https://openalex.org/keywords/hippocampal-formation","display_name":"Hippocampal formation","score":0.7528601288795471},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6235899925231934},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.5714852213859558},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5241430401802063},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4794284701347351},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46935683488845825},{"id":"https://openalex.org/keywords/dentate-gyrus","display_name":"Dentate gyrus","score":0.44865792989730835},{"id":"https://openalex.org/keywords/sulcus","display_name":"Sulcus","score":0.44357240200042725},{"id":"https://openalex.org/keywords/hippocampus","display_name":"Hippocampus","score":0.43556010723114014},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.33310946822166443},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.2524549961090088},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2080644965171814},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.17043566703796387}],"concepts":[{"id":"https://openalex.org/C2776673561","wikidata":"https://www.wikidata.org/wiki/Q655357","display_name":"Atlas (anatomy)","level":2,"score":0.7552496790885925},{"id":"https://openalex.org/C148762608","wikidata":"https://www.wikidata.org/wiki/Q3748185","display_name":"Hippocampal formation","level":2,"score":0.7528601288795471},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6235899925231934},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.5714852213859558},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5241430401802063},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4794284701347351},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46935683488845825},{"id":"https://openalex.org/C2776464000","wikidata":"https://www.wikidata.org/wiki/Q545787","display_name":"Dentate gyrus","level":3,"score":0.44865792989730835},{"id":"https://openalex.org/C2777132076","wikidata":"https://www.wikidata.org/wiki/Q2560248","display_name":"Sulcus","level":2,"score":0.44357240200042725},{"id":"https://openalex.org/C2781161787","wikidata":"https://www.wikidata.org/wiki/Q48360","display_name":"Hippocampus","level":2,"score":0.43556010723114014},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.33310946822166443},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.2524549961090088},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2080644965171814},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.17043566703796387}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/isbi.2008.4540957","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2008.4540957","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6200000047683716,"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1517008319","https://openalex.org/W1764886098","https://openalex.org/W1970928383","https://openalex.org/W1984214648","https://openalex.org/W1992992703","https://openalex.org/W1994324247","https://openalex.org/W2022350757","https://openalex.org/W2048251539","https://openalex.org/W2067856703","https://openalex.org/W2079158221","https://openalex.org/W2082484987","https://openalex.org/W2135855128","https://openalex.org/W2148347694","https://openalex.org/W2578165033","https://openalex.org/W4213069698","https://openalex.org/W6679749154"],"related_works":["https://openalex.org/W2421860156","https://openalex.org/W2365195844","https://openalex.org/W2362632522","https://openalex.org/W1968362922","https://openalex.org/W1561532865","https://openalex.org/W2083434988","https://openalex.org/W2079156156","https://openalex.org/W2356481366","https://openalex.org/W2377542069","https://openalex.org/W1990901612"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"preliminary":[3],"work":[4],"on":[5],"the":[6,14,33,45,52,72,75,83,93,100,112],"construction":[7],"of":[8,13,26,32,58,74,92,99,106,114],"a":[9,56,89],"computational":[10],"anatomical":[11],"atlas":[12,18],"human":[15],"hippocampus.":[16],"The":[17,29,97],"is":[19,69,95,109,124],"derived":[20,70],"from":[21,71],"high-resolution":[22],"9.4":[23],"Tesla":[24],"MRI":[25,73],"postmortem":[27],"samples.":[28],"main":[30],"subfields":[31],"hippocampus":[34],"(cornu":[35],"Ammonis":[36],"fields":[37],"CA1,":[38],"CA2/3":[39],"and":[40,44,62,79,88,111,119],"CA4;":[41],"dentate":[42],"gyrus;":[43],"vestigial":[46],"hippocampal":[47],"sulcus)":[48],"are":[49],"labeled":[50],"in":[51,82],"images":[53,123],"manually":[54,120],"using":[55,77],"combination":[57],"distinguishable":[59],"image":[60,68],"features":[61],"geometrical":[63],"features.":[64],"A":[65],"synthetic":[66],"average":[67],"samples":[76],"shape":[78],"intensity":[80],"averaging":[81],"diffeomorphic":[84],"non-linear":[85],"registration":[86,116],"framework,":[87],"consensus":[90,101],"labeling":[91,102,105],"template":[94],"generated.":[96],"agreement":[98],"with":[103,117],"manual":[104],"each":[107],"sample":[108],"measured,":[110],"effect":[113],"aiding":[115],"landmarks":[118],"generated":[121],"mask":[122],"evaluated.":[125]},"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}