{"id":"https://openalex.org/W2114942660","doi":"https://doi.org/10.1109/isbi.2006.1625184","title":"A Flexible Framework for Web Interfaces to Image Databases: Supporting User-Defined Ontologies and Links to External Databases","display_name":"A Flexible Framework for Web Interfaces to Image Databases: Supporting User-Defined Ontologies and Links to External Databases","publication_year":2006,"publication_date":"2006-05-25","ids":{"openalex":"https://openalex.org/W2114942660","doi":"https://doi.org/10.1109/isbi.2006.1625184","mag":"2114942660"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2006.1625184","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2006.1625184","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006.","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062523843","display_name":"Josiah Johnston","orcid":"https://orcid.org/0000-0002-6113-4518"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"J. Johnston","raw_affiliation_strings":["Image Informatics and Computational Biology Unit, Laboratory of Genetics, IRP/NIA/NIH, Baltimore, MD, USA","Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image Informatics and Computational Biology Unit, Laboratory of Genetics, IRP/NIA/NIH, Baltimore, MD, USA","institution_ids":[]},{"raw_affiliation_string":"Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019126073","display_name":"Aragudige Nagaraja","orcid":"https://orcid.org/0000-0002-1968-6976"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Nagaraja","raw_affiliation_strings":["Image Informatics and Computational Biology Unit, Laboratory of Genetics, IRP/NIA/NIH, Baltimore, MD, USA","Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image Informatics and Computational Biology Unit, Laboratory of Genetics, IRP/NIA/NIH, Baltimore, MD, USA","institution_ids":[]},{"raw_affiliation_string":"Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082929960","display_name":"Harry Hochheiser","orcid":"https://orcid.org/0000-0001-8793-9982"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Hochheiser","raw_affiliation_strings":["Image Informatics and Computational Biology Unit, Laboratory of Genetics, IRP/NIA/NIH, Baltimore, MD, USA","Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image Informatics and Computational Biology Unit, Laboratory of Genetics, IRP/NIA/NIH, Baltimore, MD, USA","institution_ids":[]},{"raw_affiliation_string":"Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055100326","display_name":"I. Goldberg","orcid":"https://orcid.org/0000-0001-8514-6110"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"I. Goldberg","raw_affiliation_strings":["Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Image Informatics & Comput. Biol. Unit, Nat. Inst. of Health, Baltimore, MD, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.9642,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.90363962,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"1380","last_page":"1383"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8182295560836792},{"id":"https://openalex.org/keywords/vocabulary","display_name":"Vocabulary","score":0.6697677969932556},{"id":"https://openalex.org/keywords/controlled-vocabulary","display_name":"Controlled vocabulary","score":0.624688446521759},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6031988859176636},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.585507869720459},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.538622260093689},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4262075424194336},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.41908344626426697},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.38568010926246643},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.09813189506530762}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8182295560836792},{"id":"https://openalex.org/C2777601683","wikidata":"https://www.wikidata.org/wiki/Q6499736","display_name":"Vocabulary","level":2,"score":0.6697677969932556},{"id":"https://openalex.org/C110615152","wikidata":"https://www.wikidata.org/wiki/Q1469824","display_name":"Controlled vocabulary","level":2,"score":0.624688446521759},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6031988859176636},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.585507869720459},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.538622260093689},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4262075424194336},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.41908344626426697},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.38568010926246643},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.09813189506530762},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/isbi.2006.1625184","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2006.1625184","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.561.2612","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.561.2612","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.openmicroscopy.org/site/about/files/OntologyTools.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.572.3332","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.572.3332","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://josiah.berkeley.edu/Papers/OntologyTools.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.898.9768","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.898.9768","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.researchgate.net/profile/Harry_Hochheiser/publication/221625280_A_flexible_framework_for_Web_interfaces_to_image_databases_supporting_user-defined_ontologies_and_links_to_external_databases/links/00b7d514c58722a803000000.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7400000095367432,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":4,"referenced_works":["https://openalex.org/W2094453322","https://openalex.org/W2147385427","https://openalex.org/W2168166653","https://openalex.org/W3001125366"],"related_works":["https://openalex.org/W4399124891","https://openalex.org/W2033835987","https://openalex.org/W1989811317","https://openalex.org/W3202867831","https://openalex.org/W4248750016","https://openalex.org/W1597990569","https://openalex.org/W1824784554","https://openalex.org/W3141940143","https://openalex.org/W1561860948","https://openalex.org/W1979295894"],"abstract_inverted_index":{"Vocabularies":[0],"to":[1,7,66,100],"describe":[2],"research":[3],"findings":[4],"are":[5],"needed":[6],"effectively":[8],"use":[9],"scientific":[10],"databases.":[11,74],"As":[12],"understanding":[13],"of":[14,33,41,47,60,80],"data":[15,62,68],"evolves,":[16],"scientists":[17],"need":[18],"tools":[19,48],"for":[20,49],"extending":[21,97],"the":[22,31,86,98],"vocabularies.":[23],"A":[24,75],"Web-based":[25],"framework":[26,99],"addresses":[27],"these":[28],"issues":[29],"in":[30,96],"context":[32],"a":[34],"microscopy":[35],"image":[36],"database.":[37],"It":[38],"allows":[39],"definition":[40],"simple":[42],"vocabularies":[43],"and":[44,52],"automatic":[45],"generation":[46],"annotating,":[50],"displaying,":[51],"searching":[53],"with":[54,85,93],"this":[55],"vocabulary.":[56],"The":[57],"resulting":[58],"displays":[59],"annotated":[61],"can":[63],"be":[64],"linked":[65],"external":[67],"sources":[69],"such":[70],"as":[71],"model":[72],"organism":[73],"case":[76],"study":[77],"involving":[78],"publication":[79],"in-situ":[81],"hybridization":[82],"images":[83],"cross-linked":[84],"Mouse":[87],"Gene":[88],"Index":[89],"is":[90],"described,":[91],"along":[92],"preliminary":[94],"steps":[95],"handle":[101],"fully":[102],"structured":[103],"ontologies.":[104]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}