{"id":"https://openalex.org/W2161505125","doi":"https://doi.org/10.1109/isbi.2006.1625013","title":"Closed and Open Source Neuroimage Analysis Tools and Libraries at UNC","display_name":"Closed and Open Source Neuroimage Analysis Tools and Libraries at UNC","publication_year":2006,"publication_date":"2006-05-25","ids":{"openalex":"https://openalex.org/W2161505125","doi":"https://doi.org/10.1109/isbi.2006.1625013","mag":"2161505125"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2006.1625013","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2006.1625013","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065838160","display_name":"Martin Styner","orcid":"https://orcid.org/0000-0002-8747-5118"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"M. Styner","raw_affiliation_strings":["Dept. of Comput. Sci., North Carolina, Univ., Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Comput. Sci., North Carolina, Univ., Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069420294","display_name":"Matthieu Jomier","orcid":null},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Jomier","raw_affiliation_strings":["Dept. of Comput. Sci., North Carolina, Univ., Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Comput. Sci., North Carolina, Univ., Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010769610","display_name":"Guido Gerig","orcid":"https://orcid.org/0000-0002-9547-6233"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Gerig","raw_affiliation_strings":["Dept. of Comput. Sci., North Carolina, Univ., Chapel Hill, NC, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Comput. Sci., North Carolina, Univ., Chapel Hill, NC, USA","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065838160"],"corresponding_institution_ids":["https://openalex.org/I114027177"],"apc_list":null,"apc_paid":null,"fwci":1.5157,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86987898,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"702","last_page":"705"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.9758999943733215,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9700999855995178,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.7030983567237854},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6583340764045715},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32638442516326904},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.15383172035217285},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10047659277915955}],"concepts":[{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.7030983567237854},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6583340764045715},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32638442516326904},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.15383172035217285},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10047659277915955}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1109/isbi.2006.1625013","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2006.1625013","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"3rd IEEE International Symposium on Biomedical Imaging: Macro to Nano, 2006.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.115.3531","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.115.3531","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unc.edu/~gerig/publications/ISBI06-Neurolib-final.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.118.408","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.118.408","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.unc.edu/~styner/public/MyPapers/ISBI/ISBI06_Neurolib.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.140.3489","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.140.3489","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.utah.edu/projects/sci/publications/styner06/Styner_ISBI2006a.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.380.5447","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.380.5447","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://midag.cs.unc.edu/pubs/papers/ISBI06_Styner.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Partnerships for the goals","id":"https://metadata.un.org/sdg/17","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":6,"referenced_works":["https://openalex.org/W103661761","https://openalex.org/W2019120144","https://openalex.org/W2069529061","https://openalex.org/W2491091343","https://openalex.org/W4206397022","https://openalex.org/W6604141626"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2530322880","https://openalex.org/W1596801655","https://openalex.org/W2359140296"],"abstract_inverted_index":{"The":[0,92],"emergence":[1],"of":[2,16,51,79,87,111],"open-source":[3],"libraries":[4,56,102],"and":[5,27,55,67,103,126,135],"development":[6,19,53,78,183],"tools":[7,54,134],"in":[8,20,73,82],"the":[9,14,49,58,77,85,139,146,168,171,186],"last":[10],"decade":[11],"has":[12],"changed":[13],"process":[15],"academic":[17,187],"software":[18],"many":[21],"ways.":[22],"In":[23],"medical":[24],"image":[25],"processing":[26],"visualization":[28],"this":[29,182],"change":[30],"is":[31,97,120,143,175,189],"especially":[32],"evident,":[33],"also":[34,71],"because":[35],"open":[36,64,80,116,140,172],"source":[37,65,81,117,130,141,173],"projects":[38],"are":[39],"actively":[40],"furthered":[41],"by":[42],"grant":[43],"funding":[44],"institutions.":[45],"This":[46,157],"manuscript":[47],"presents":[48],"use":[50],"such":[52],"at":[57,94],"UNC":[59],"Neuro-Image":[60],"Analysis":[61],"Laboratory":[62],"for":[63],"applications":[66,104],"tools.":[68],"We":[69],"have":[70],"experienced":[72],"our":[74,95,160,179],"research":[75],"that":[76,109,119],"academics":[83],"raises":[84],"issue":[86],"access":[88],"to":[89,98,138,170],"unpublished":[90,133,163],"methodology.":[91],"strategy":[93],"laboratory":[96],"combine":[99],"all":[100],"in-house":[101],"into":[105],"a":[106,114,123,127],"single":[107],"repository":[108],"consists":[110],"two":[112],"parts:":[113],"fully":[115],"part":[118,131,142,174],"distributed":[121],"under":[122],"Berkley-style":[124],"license":[125],"private,":[128],"closed":[129],"with":[132,181],"methods.":[136],"Access":[137],"unrestricted,":[144],"whereas":[145],"private":[147,169],"parts":[148],"can":[149],"only":[150],"be":[151],"downloaded":[152],"via":[153],"cvs":[154],"user":[155],"login.":[156],"setup":[158],"solved":[159],"issues":[161],"regarding":[162],"methodology,":[164],"as":[165],"migration":[166],"from":[167],"very":[176,190],"simple.":[177],"Overall":[178],"experience":[180],"environment":[184],"within":[185],"setting":[188],"positive.":[191],"1.":[192]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
