{"id":"https://openalex.org/W2126190594","doi":"https://doi.org/10.1109/isbi.2004.1398619","title":"SCIRun/BioPSE: integrated problem solving environment for bioelectric field problems and visualization","display_name":"SCIRun/BioPSE: integrated problem solving environment for bioelectric field problems and visualization","publication_year":2005,"publication_date":"2005-04-12","ids":{"openalex":"https://openalex.org/W2126190594","doi":"https://doi.org/10.1109/isbi.2004.1398619","mag":"2126190594"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2004.1398619","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2004.1398619","pdf_url":null,"source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5023536951","display_name":"Rob MacLeod","orcid":"https://orcid.org/0000-0002-0000-0356"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R.S. MacLeod","raw_affiliation_strings":["Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","Inst. of Sci. Comput. & Imaging, Utah Univ., Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Inst. of Sci. Comput. & Imaging, Utah Univ., Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079840882","display_name":"Omri Weinstein","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"O.M. Weinstein","raw_affiliation_strings":["Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","Inst. of Sci. Comput. & Imaging, Utah Univ., Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Inst. of Sci. Comput. & Imaging, Utah Univ., Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053769542","display_name":"J. Davison de St. Germain","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Davison de St Germain","raw_affiliation_strings":["Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","Inst. of Sci. Comput. & Imaging, Utah Univ., Salt Lake City, UT, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Inst. of Sci. Comput. & Imaging, Utah Univ., Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079980080","display_name":"Dana H. Brooks","orcid":"https://orcid.org/0000-0003-3231-6715"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D.H. Brooks","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, USA","[Department of Electrical and computer Engineering, Northeastern University, Boston, MA, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Northeastern University, Boston, MA, USA","institution_ids":["https://openalex.org/I12912129"]},{"raw_affiliation_string":"[Department of Electrical and computer Engineering, Northeastern University, Boston, MA, USA]","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102776250","display_name":"Christopher R. Johnson","orcid":"https://orcid.org/0000-0003-4265-0899"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C.R. Johnson","raw_affiliation_strings":["Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","[Scientific Computing and Imaging Institute, University of Utah, Salt lake, UT, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scientific Computing and Imaging Institute, University of Utah, Salt Lake, UT, USA","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"[Scientific Computing and Imaging Institute, University of Utah, Salt lake, UT, USA]","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111046341","display_name":"S. Parker","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"S.G. Parker","raw_affiliation_strings":["Center for Bioelectric Field Modeling, Simulation, and Visualization, NIH/NCRR","[Center for Bioelectric Field Modeling, Simulation,  and Visualization, NIH/NCRR]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Bioelectric Field Modeling, Simulation, and Visualization, NIH/NCRR","institution_ids":[]},{"raw_affiliation_string":"[Center for Bioelectric Field Modeling, Simulation,  and Visualization, NIH/NCRR]","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":6.8801,"has_fulltext":false,"cited_by_count":34,"citation_normalized_percentile":{"value":0.96454631,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"2","issue":null,"first_page":"640","last_page":"643"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13650","display_name":"Computational Physics and Python Applications","score":0.9837999939918518,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8032268285751343},{"id":"https://openalex.org/keywords/documentation","display_name":"Documentation","score":0.7166556715965271},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7141284942626953},{"id":"https://openalex.org/keywords/dataflow","display_name":"Dataflow","score":0.6974422931671143},{"id":"https://openalex.org/keywords/software-visualization","display_name":"Software visualization","score":0.6690576076507568},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.6646629571914673},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.6384888887405396},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6117004752159119},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.557008683681488},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.48365604877471924},{"id":"https://openalex.org/keywords/source-code","display_name":"Source code","score":0.4197167158126831},{"id":"https://openalex.org/keywords/software-system","display_name":"Software system","score":0.40459635853767395},{"id":"https://openalex.org/keywords/software-construction","display_name":"Software construction","score":0.34016555547714233},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3350042402744293},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.19159841537475586}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8032268285751343},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.7166556715965271},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7141284942626953},{"id":"https://openalex.org/C96324660","wikidata":"https://www.wikidata.org/wiki/Q205446","display_name":"Dataflow","level":2,"score":0.6974422931671143},{"id":"https://openalex.org/C4379982","wikidata":"https://www.wikidata.org/wiki/Q1273511","display_name":"Software visualization","level":5,"score":0.6690576076507568},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.6646629571914673},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.6384888887405396},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6117004752159119},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.557008683681488},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.48365604877471924},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.4197167158126831},{"id":"https://openalex.org/C149091818","wikidata":"https://www.wikidata.org/wiki/Q2429814","display_name":"Software system","level":3,"score":0.40459635853767395},{"id":"https://openalex.org/C186846655","wikidata":"https://www.wikidata.org/wiki/Q3398377","display_name":"Software construction","level":4,"score":0.34016555547714233},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3350042402744293},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.19159841537475586},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isbi.2004.1398619","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2004.1398619","pdf_url":null,"source":null,"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2004 2nd IEEE International Symposium on Biomedical Imaging: Macro to Nano (IEEE Cat No. 04EX821)","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.140.2286","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.140.2286","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.utah.edu/projects/sci/publications/macleod04/paper-utah.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":3,"referenced_works":["https://openalex.org/W1858694651","https://openalex.org/W2053652655","https://openalex.org/W2166733622"],"related_works":["https://openalex.org/W2149598945","https://openalex.org/W2139694402","https://openalex.org/W2049696050","https://openalex.org/W1867474408","https://openalex.org/W2295396159","https://openalex.org/W2541111347","https://openalex.org/W2253304054","https://openalex.org/W4285175229","https://openalex.org/W56096921","https://openalex.org/W2603932185"],"abstract_inverted_index":{"SCIRun":[0,28,49,64],"is":[1,29,68],"a":[2,45,133,173,191,200],"general":[3],"purpose":[4],"problem":[5],"solving":[6],"environment":[7],"that":[8,85],"seeks":[9],"to":[10,103,121,148,157,187],"integrate":[11],"the":[12,61,78,105,108,142,162,176],"steps":[13],"of":[14,20,27,32,38,63,107,144,166,175],"preparing,":[15],"executing,":[16],"and":[17,22,40,58,60,83,97,127,139,150,156,168,179,183,189],"visualizing":[18],"simulations":[19,57],"physical":[21],"biological":[23],"systems.":[24],"The":[25],"implementation":[26],"by":[30,118],"means":[31],"an":[33],"interactive":[34],"dataflow":[35],"network":[36],"consisting":[37],"modules":[39,53],"data":[41,155],"pipes":[42],"exposed":[43],"as":[44,70],"visual":[46],"programming":[47],"language.":[48],"also":[50,101,131],"contains":[51],"specific":[52,181],"for":[54,91,135,164],"bioelectric":[55],"field":[56],"visualizations":[59],"combination":[62],"with":[65,141,161,185],"this":[66],"package":[67,110],"known":[69],"BioPSE":[71],"(www.sci.utah.edu/software/biopse).":[72],"This":[73],"software":[74,92,177,195],"has":[75],"been":[76],"in":[77,84],"public":[79],"domain":[80],"since":[81],"2000":[82],"time":[86],"we":[87],"have":[88,100,130],"developed":[89],"strategies":[90],"development,":[93],"engineering,":[94],"testing,":[95],"documentation,":[96],"training.":[98],"We":[99,129,170],"continued":[102],"expand":[104],"scope":[106],"SCIRun/BioPSE":[109],"not":[111],"only":[112],"through":[113],"our":[114],"own":[115],"codes":[116],"but":[117],"constructing":[119],"bridges":[120],"other":[122],"systems,":[123],"both":[124],"open":[125,193],"source":[126,194],"proprietary.":[128],"created":[132],"repository":[134],"relevant":[136],"sample":[137],"networks":[138],"datasets":[140],"aim":[143],"allowing":[145],"diverse":[146],"groups":[147],"test":[149],"evaluate":[151],"algorithms":[152],"using":[153],"identical":[154],"share":[158],"their":[159],"results":[160],"community":[163],"comparison":[165],"performance":[167],"accuracy.":[169],"present":[171],"here":[172],"summary":[174],"system":[178],"describe":[180],"experiences":[182],"conclusions":[184],"regard":[186],"creating":[188],"managing":[190],"large":[192],"project":[196],"carried":[197],"out":[198],"within":[199],"university":[201],"setting.":[202]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}