{"id":"https://openalex.org/W1594876455","doi":"https://doi.org/10.1109/isbi.2002.1029260","title":"Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections","display_name":"Three dimensional functional cartography of the human basal ganglia by registration of optical and histological serial sections","publication_year":2003,"publication_date":"2003-06-25","ids":{"openalex":"https://openalex.org/W1594876455","doi":"https://doi.org/10.1109/isbi.2002.1029260","mag":"1594876455"},"language":"en","primary_location":{"id":"doi:10.1109/isbi.2002.1029260","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2002.1029260","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings IEEE International Symposium on Biomedical Imaging","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033034157","display_name":"\u00c9ric Bardinet","orcid":"https://orcid.org/0000-0001-8652-8751"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"E. Bardinet","raw_affiliation_strings":["Epidaure Project, INRIA, France","EPIDAURE - Project, INRIA, Sophia Antipolis, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epidaure Project, INRIA, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"EPIDAURE - Project, INRIA, Sophia Antipolis, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082106258","display_name":"S\u00e9bastien Ourselin","orcid":"https://orcid.org/0000-0002-5694-5340"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"S. Ourselin","raw_affiliation_strings":["Epidaure Project, INRIA, France","EPIDAURE - Project, INRIA, Sophia Antipolis, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epidaure Project, INRIA, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"EPIDAURE - Project, INRIA, Sophia Antipolis, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035428636","display_name":"Gr\u00e9goire Malandain","orcid":"https://orcid.org/0000-0002-4559-1575"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"G. Malandain","raw_affiliation_strings":["Epidaure Project, INRIA, France","EPIDAURE - Project, INRIA, Sophia Antipolis, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epidaure Project, INRIA, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"EPIDAURE - Project, INRIA, Sophia Antipolis, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089992933","display_name":"Dominique Tand\u00e9","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210107937","display_name":"Immunologie et Neurog\u00e9n\u00e9tique Exp\u00e9rimentales et Mol\u00e9culaires","ror":"https://ror.org/01mhd9b84","country_code":"FR","type":"facility","lineage":["https://openalex.org/I12449238","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210096427","https://openalex.org/I4210107937","https://openalex.org/I4210144652"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"D. Tande","raw_affiliation_strings":["INSERM U.289, Salp \u00ea tri \u00e8re Hospital, Paris, France","Neurologie et th\u00e9rapeutique exp\u00e9rimentale"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM U.289, Salp \u00ea tri \u00e8re Hospital, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Neurologie et th\u00e9rapeutique exp\u00e9rimentale","institution_ids":["https://openalex.org/I4210107937"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020051382","display_name":"Karine Parain","orcid":null},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210106344","display_name":"Hypertension pulmonaire : physiopathologie et innovation th\u00e9rapeutique","ror":"https://ror.org/01et6g203","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I277688954","https://openalex.org/I4210106344"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"K. Parain","raw_affiliation_strings":["INSERM U.289, Salp \u00ea tri \u00e8re Hospital, Paris, France","Physiopathologie et th\u00e9rapie du muscle stri\u00e9"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM U.289, Salp \u00ea tri \u00e8re Hospital, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"Physiopathologie et th\u00e9rapie du muscle stri\u00e9","institution_ids":["https://openalex.org/I4210106344"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110261261","display_name":"Nicholas Ayache","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"N. Ayache","raw_affiliation_strings":["Epidaure Project, INRIA, France","Medical imaging and robotics"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Epidaure Project, INRIA, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Medical imaging and robotics","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007646726","display_name":"J\u00e9r\u00f4me Yelnik","orcid":"https://orcid.org/0000-0003-4814-708X"},"institutions":[{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210121705","display_name":"Piti\u00e9-Salp\u00eatri\u00e8re Hospital","ror":"https://ror.org/02mh9a093","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210097159","https://openalex.org/I4210121705"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"J. Yelnik","raw_affiliation_strings":["INSERM U.289, Salp \u00ea tri \u00e8re Hospital, Paris, France","CHU Piti\u00e9-Salp\u00eatri\u00e8re [AP-HP]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INSERM U.289, Salp \u00ea tri \u00e8re Hospital, Paris, France","institution_ids":["https://openalex.org/I154526488"]},{"raw_affiliation_string":"CHU Piti\u00e9-Salp\u00eatri\u00e8re [AP-HP]","institution_ids":["https://openalex.org/I39804081","https://openalex.org/I4210121705"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":8.3111,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.98387097,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"329","last_page":"332"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10919","display_name":"Neurological disorders and treatments","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10919","display_name":"Neurological disorders and treatments","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10085","display_name":"Parkinson's Disease Mechanisms and Treatments","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/2728","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fiducial-marker","display_name":"Fiducial marker","score":0.7383790016174316},{"id":"https://openalex.org/keywords/histology","display_name":"Histology","score":0.5731955170631409},{"id":"https://openalex.org/keywords/subthalamic-nucleus","display_name":"Subthalamic nucleus","score":0.5717203617095947},{"id":"https://openalex.org/keywords/basal-ganglia","display_name":"Basal ganglia","score":0.5520223379135132},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.48882314562797546},{"id":"https://openalex.org/keywords/image-registration","display_name":"Image registration","score":0.4547232687473297},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.44584572315216064},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.38922545313835144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3762199580669403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3392655849456787},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31620532274246216},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3034082055091858},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.19649097323417664},{"id":"https://openalex.org/keywords/deep-brain-stimulation","display_name":"Deep brain stimulation","score":0.15223237872123718},{"id":"https://openalex.org/keywords/parkinsons-disease","display_name":"Parkinson's disease","score":0.1386553943157196},{"id":"https://openalex.org/keywords/central-nervous-system","display_name":"Central nervous system","score":0.08990076184272766}],"concepts":[{"id":"https://openalex.org/C173974348","wikidata":"https://www.wikidata.org/wiki/Q1469893","display_name":"Fiducial marker","level":2,"score":0.7383790016174316},{"id":"https://openalex.org/C57742111","wikidata":"https://www.wikidata.org/wiki/Q7168","display_name":"Histology","level":2,"score":0.5731955170631409},{"id":"https://openalex.org/C2777319143","wikidata":"https://www.wikidata.org/wiki/Q2270424","display_name":"Subthalamic nucleus","level":5,"score":0.5717203617095947},{"id":"https://openalex.org/C2778187257","wikidata":"https://www.wikidata.org/wiki/Q464210","display_name":"Basal ganglia","level":3,"score":0.5520223379135132},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.48882314562797546},{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.4547232687473297},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.44584572315216064},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.38922545313835144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3762199580669403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3392655849456787},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31620532274246216},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3034082055091858},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.19649097323417664},{"id":"https://openalex.org/C2778542668","wikidata":"https://www.wikidata.org/wiki/Q618076","display_name":"Deep brain stimulation","level":4,"score":0.15223237872123718},{"id":"https://openalex.org/C2779734285","wikidata":"https://www.wikidata.org/wiki/Q11085","display_name":"Parkinson's disease","level":3,"score":0.1386553943157196},{"id":"https://openalex.org/C529278444","wikidata":"https://www.wikidata.org/wiki/Q47273","display_name":"Central nervous system","level":2,"score":0.08990076184272766},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/isbi.2002.1029260","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isbi.2002.1029260","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings IEEE International Symposium on Biomedical Imaging","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.12.8276","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.12.8276","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ftp://ftp-sop.inria.fr/epidaure/Publications/Bardinet/bardinet-isbi-2002.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:inria-00615915v1","is_oa":false,"landing_page_url":"https://inria.hal.science/inria-00615915","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE International Symposium on Biomedical Imaging, 2002, Washington, USA, United States. pp.329--332","raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"pmh:oai:eprints.ucl.ac.uk.OAI2:70662","is_oa":false,"landing_page_url":"http://discovery.ucl.ac.uk/70662/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400024","display_name":"UCL Discovery (University College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45129253","host_organization_name":"University College London","host_organization_lineage":["https://openalex.org/I45129253"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In: 2002 IEEE INTERNATIONAL SYMPOSIUM ON BIOMEDICAL IMAGING, PROCEEDINGS. (pp. 329 - 332). IEEE (2002)","raw_type":"Proceedings paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1498546291","https://openalex.org/W1965121287","https://openalex.org/W1976257215","https://openalex.org/W1985460598","https://openalex.org/W1986979777","https://openalex.org/W1994180654","https://openalex.org/W2016820525","https://openalex.org/W2023783314","https://openalex.org/W2036757104","https://openalex.org/W2065360467","https://openalex.org/W2074616189","https://openalex.org/W4249955152"],"related_works":["https://openalex.org/W2075021671","https://openalex.org/W2410190396","https://openalex.org/W49240957","https://openalex.org/W13858002","https://openalex.org/W41352217","https://openalex.org/W2028041952","https://openalex.org/W337778128","https://openalex.org/W4256445454","https://openalex.org/W2026028240","https://openalex.org/W185666007"],"abstract_inverted_index":{"In":[0],"functional":[1,12,112],"neurosurgery,":[2],"there":[3],"is":[4,16,24,37,51,116,153,191],"a":[5,126,156,184],"need":[6],"for":[7],"accurate":[8,81],"localisation":[9],"of":[10,29,47,83,101,106,128,148,161,166],"the":[11,27,32,48,61,64,69,76,84,99,142,146,162,171],"targets.":[13],"One":[14],"example":[15],"given":[17],"by":[18,55,60,117],"Parkinson's":[19],"disease.":[20],"The":[21],"surgical":[22],"intervention":[23],"based":[25],"on":[26,39,90],"introduction":[28],"electrodes":[30],"in":[31,125],"subthalamic":[33],"nucleus.":[34],"This":[35],"nucleus":[36],"targeted":[38],"pre-operative":[40],"stereotactic":[41],"MR":[42,45,66,102,151],"acquisitions.":[43],"But":[44,114],"imaging":[46],"basal":[49,85],"ganglia":[50,86],"intrinsically":[52],"limited,":[53],"first":[54,143],"image":[56],"resolution,":[57],"and":[58,68,80,150,190],"second":[59],"relationship":[62],"between":[63],"measured":[65],"signal":[67],"real":[70],"anatomy,":[71],"not":[72],"clearly":[73],"understood.":[74],"On":[75],"other":[77],"hand,":[78],"detailed":[79],"cartography":[82],"can":[87],"be":[88],"performed":[89],"post":[91],"mortem":[92],"histological":[93,107,121,149,163,172,197],"serial":[94,130],"sections.":[95],"Indeed,":[96],"histology":[97,115],"overcomes":[98],"limitations":[100],"imaging.":[103],"Moreover,":[104],"staining":[105],"sections":[108,173],"allows":[109,181],"to":[110,154,182,194],"recover":[111],"information.":[113],"nature":[118],"two-dimensional.":[119],"An":[120],"data":[122],"set":[123],"consists":[124],"series":[127],"disorganized":[129],"sections,":[131],"as":[132,176,178],"three":[133,158,187],"dimensional":[134,159,188],"shape":[135],"information":[136,152],"was":[137],"lost":[138],"during":[139,168],"sectioning.":[140],"Therefore,":[141],"step":[144],"toward":[145],"integration":[147],"perform":[155],"reliable":[157],"reconstruction":[160],"volume.":[164],"Acquisition":[165],"photographs":[167],"sectioning,":[169,175],"showing":[170],"before":[174],"well":[177],"fiducial":[179],"landmarks,":[180],"reconstruct":[183],"volume":[185],"with":[186,199],"integrity,":[189],"further":[192],"used":[193],"register":[195],"each":[196],"section":[198],"its":[200],"corresponding":[201],"optical":[202],"section.":[203]},"counts_by_year":[{"year":2015,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
