{"id":"https://openalex.org/W2036487432","doi":"https://doi.org/10.1109/isb.2012.6314142","title":"Application of Granger causality to gene regulatory network discovery","display_name":"Application of Granger causality to gene regulatory network discovery","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W2036487432","doi":"https://doi.org/10.1109/isb.2012.6314142","mag":"2036487432"},"language":"en","primary_location":{"id":"doi:10.1109/isb.2012.6314142","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isb.2012.6314142","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 6th International Conference on Systems Biology (ISB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079086059","display_name":"Gary Hak Fui Tam","orcid":null},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Gary Hak Fui Tam","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, University of Hong Kong, Hong Kong, China","Department of Electrical & Electronic Engineering, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical & Electronic Engineering, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011796695","display_name":"Chunqi Chang","orcid":"https://orcid.org/0000-0003-1172-6491"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Chunqi Chang","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, University of Hong Kong, Hong Kong, China","Department of Electrical & Electronic Engineering, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical & Electronic Engineering, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102075304","display_name":"Yeung Sam Hung","orcid":null},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]},{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yeung Sam Hung","raw_affiliation_strings":["Department of Electrical and Electronic Engineering, University of Hong Kong, Hong Kong, China","Department of Electrical & Electronic Engineering, The University of Hong Kong, Hong Kong"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Electronic Engineering, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Department of Electrical & Electronic Engineering, The University of Hong Kong, Hong Kong","institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5079086059"],"corresponding_institution_ids":["https://openalex.org/I200769079","https://openalex.org/I889458895"],"apc_list":null,"apc_paid":null,"fwci":0.6567,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.67501217,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"232","last_page":"239"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spurious-relationship","display_name":"Spurious relationship","score":0.8352524638175964},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7913503646850586},{"id":"https://openalex.org/keywords/akaike-information-criterion","display_name":"Akaike information criterion","score":0.6778202056884766},{"id":"https://openalex.org/keywords/granger-causality","display_name":"Granger causality","score":0.6646602153778076},{"id":"https://openalex.org/keywords/bayesian-information-criterion","display_name":"Bayesian information criterion","score":0.6110610365867615},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5959160923957825},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5701931715011597},{"id":"https://openalex.org/keywords/autoregressive-model","display_name":"Autoregressive model","score":0.5154153108596802},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.42291656136512756},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3285868763923645},{"id":"https://openalex.org/keywords/econometrics","display_name":"Econometrics","score":0.3168748617172241},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.30790162086486816},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.30370259284973145},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20808982849121094},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19830787181854248}],"concepts":[{"id":"https://openalex.org/C97256817","wikidata":"https://www.wikidata.org/wiki/Q1462316","display_name":"Spurious relationship","level":2,"score":0.8352524638175964},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7913503646850586},{"id":"https://openalex.org/C126674687","wikidata":"https://www.wikidata.org/wiki/Q1662573","display_name":"Akaike information criterion","level":2,"score":0.6778202056884766},{"id":"https://openalex.org/C129824826","wikidata":"https://www.wikidata.org/wiki/Q2630107","display_name":"Granger causality","level":2,"score":0.6646602153778076},{"id":"https://openalex.org/C168136583","wikidata":"https://www.wikidata.org/wiki/Q1988242","display_name":"Bayesian information criterion","level":2,"score":0.6110610365867615},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5959160923957825},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5701931715011597},{"id":"https://openalex.org/C159877910","wikidata":"https://www.wikidata.org/wiki/Q2202883","display_name":"Autoregressive model","level":2,"score":0.5154153108596802},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.42291656136512756},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3285868763923645},{"id":"https://openalex.org/C149782125","wikidata":"https://www.wikidata.org/wiki/Q160039","display_name":"Econometrics","level":1,"score":0.3168748617172241},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.30790162086486816},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.30370259284973145},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20808982849121094},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19830787181854248}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isb.2012.6314142","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isb.2012.6314142","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 6th International Conference on Systems Biology (ISB)","raw_type":"proceedings-article"},{"id":"pmh:oai:hub.hku.hk:10722/186739","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/186739","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference_Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W633291512","https://openalex.org/W1554944419","https://openalex.org/W1636081627","https://openalex.org/W1981547652","https://openalex.org/W1989043999","https://openalex.org/W1990569257","https://openalex.org/W2008878870","https://openalex.org/W2044503966","https://openalex.org/W2062029454","https://openalex.org/W2067841476","https://openalex.org/W2074682976","https://openalex.org/W2101567517","https://openalex.org/W2105712639","https://openalex.org/W2110065044","https://openalex.org/W2131729872","https://openalex.org/W2132663737","https://openalex.org/W2136562407","https://openalex.org/W2142635246","https://openalex.org/W2168175751","https://openalex.org/W2171033594","https://openalex.org/W2178225550","https://openalex.org/W2799004609","https://openalex.org/W3149745985","https://openalex.org/W4206346703","https://openalex.org/W4242495845","https://openalex.org/W4248974836","https://openalex.org/W4297440291"],"related_works":["https://openalex.org/W1566728629","https://openalex.org/W2617987378","https://openalex.org/W2509820422","https://openalex.org/W1502087262","https://openalex.org/W3187368641","https://openalex.org/W2626271282","https://openalex.org/W3122388856","https://openalex.org/W1946191587","https://openalex.org/W2088726129","https://openalex.org/W1998988312"],"abstract_inverted_index":{"Granger":[0],"causality":[1],"(GC)":[2],"has":[3],"been":[4],"applied":[5,33,42],"to":[6,43,112,148,160,176,200],"gene":[7],"regulatory":[8],"network":[9,115,188],"discovery":[10],"using":[11,90,144],"DNA":[12],"microarray":[13],"time-series":[14],"data.":[15],"Since":[16],"the":[17,25,77,80,167,170,181],"number":[18],"of":[19,79,116,204,209],"genes":[20,44],"is":[21,40,84,104,109,139,174],"much":[22],"larger":[23],"than":[24,180,207],"data":[26,54],"length,":[27],"a":[28,35,91,97,114,120,131,136,161],"full":[29,98,132,137],"model":[30,83,93,99,133,138,145,158,168],"cannot":[31],"be":[32,177],"in":[34,65],"straightforward":[36],"manner,":[37],"hence":[38],"GC":[39,67,108,156],"often":[41],"pairwisely.":[45],"In":[46,69],"this":[47],"paper,":[48],"firstly":[49],"we":[50,95,142,153],"investigate":[51],"with":[52,130,157,194],"synthetic":[53],"and":[55,123,187,192],"point":[56],"out":[57],"how":[58],"spurious":[59,71,150],"causalities":[60,72],"(false":[61],"discoveries)":[62],"may":[63,73],"emerge":[64],"pairwise":[66,101,107,155],"detection.":[68],"addition,":[70],"also":[74],"arise":[75],"if":[76,106],"order":[78],"vector":[81],"autoregressive":[82],"not":[85,140],"high":[86],"enough.":[87],"Therefore,":[88],"besides":[89],"suitable":[92,179],"order,":[94,169],"recommend":[96,143],"over":[100],"GC.":[102],"This":[103],"possible":[105],"first":[110],"used":[111],"identify":[113],"interactions":[117,127,205],"among":[118],"only":[119],"few":[121],"genes,":[122],"then":[124],"all":[125],"these":[126],"are":[128,190],"validated":[129],"again.":[134],"If":[135],"possible,":[141],"validation":[146,159],"techniques":[147],"remove":[149],"discoveries.":[151],"Secondly,":[152],"apply":[154],"real":[162],"dataset":[163],"(HeLa).":[164],"To":[165],"estimate":[166],"Akaike":[171],"information":[172,183],"criterion":[173],"found":[175],"more":[178],"Bayesian":[182],"criterion.":[184],"Degree":[185],"distribution":[186],"hubs":[189,198],"obtained":[191],"compared":[193],"previous":[195],"publications.":[196],"The":[197],"tend":[199],"act":[201],"as":[202],"sources":[203],"rather":[206],"receivers":[208],"interactions.":[210]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2016-06-24T00:00:00"}
