{"id":"https://openalex.org/W2099480652","doi":"https://doi.org/10.1109/isb.2012.6314103","title":"Metabolite biomarker discovery for metabolic diseases by flux analysis","display_name":"Metabolite biomarker discovery for metabolic diseases by flux analysis","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W2099480652","doi":"https://doi.org/10.1109/isb.2012.6314103","mag":"2099480652"},"language":"en","primary_location":{"id":"doi:10.1109/isb.2012.6314103","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isb.2012.6314103","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 6th International Conference on Systems Biology (ISB)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100388546","display_name":"Limin Li","orcid":"https://orcid.org/0000-0003-3572-6832"},"institutions":[{"id":"https://openalex.org/I87445476","display_name":"Xi'an Jiaotong University","ror":"https://ror.org/017zhmm22","country_code":"CN","type":"education","lineage":["https://openalex.org/I87445476"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Limin Li","raw_affiliation_strings":["Institute of Information and System Science, Xi'an Jiaotong University, Xi'an, China","Institute of Information and System Science, Xi'an Jiaotong University, 710049, China"],"affiliations":[{"raw_affiliation_string":"Institute of Information and System Science, Xi'an Jiaotong University, Xi'an, China","institution_ids":["https://openalex.org/I87445476"]},{"raw_affiliation_string":"Institute of Information and System Science, Xi'an Jiaotong University, 710049, China","institution_ids":["https://openalex.org/I87445476"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100712102","display_name":"Hao Jiang","orcid":"https://orcid.org/0000-0001-5891-6044"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Hao Jiang","raw_affiliation_strings":["Advanced Modeling and Applied Computing Laboratory, Department of Mathematics, University of Hong Kong, Hong Kong, China","Advanced Modeling and Applied Computing Laboratory, Department of Mathematics; The University of Hong Kong; Pokfulam Road Hong Kong"],"affiliations":[{"raw_affiliation_string":"Advanced Modeling and Applied Computing Laboratory, Department of Mathematics, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Advanced Modeling and Applied Computing Laboratory, Department of Mathematics; The University of Hong Kong; Pokfulam Road Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086061723","display_name":"Wai\u2010Ki Ching","orcid":"https://orcid.org/0000-0002-5785-3210"},"institutions":[{"id":"https://openalex.org/I889458895","display_name":"University of Hong Kong","ror":"https://ror.org/02zhqgq86","country_code":"HK","type":"education","lineage":["https://openalex.org/I889458895"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Wai-Ki Ching","raw_affiliation_strings":["Advanced Modeling and Applied Computing Laboratory, Department of Mathematics, University of Hong Kong, Hong Kong, China","Advanced Modeling and Applied Computing Laboratory, Department of Mathematics; The University of Hong Kong; Pokfulam Road Hong Kong"],"affiliations":[{"raw_affiliation_string":"Advanced Modeling and Applied Computing Laboratory, Department of Mathematics, University of Hong Kong, Hong Kong, China","institution_ids":["https://openalex.org/I889458895"]},{"raw_affiliation_string":"Advanced Modeling and Applied Computing Laboratory, Department of Mathematics; The University of Hong Kong; Pokfulam Road Hong Kong","institution_ids":["https://openalex.org/I889458895"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061412086","display_name":"Vassilis S. Vassiliadis","orcid":null},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Vassilis S. Vassiliadis","raw_affiliation_strings":["Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK","Department of Chemical Engineering and Biotechnology, University of Cambridge, Pembroke Street, U.K"],"affiliations":[{"raw_affiliation_string":"Department of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]},{"raw_affiliation_string":"Department of Chemical Engineering and Biotechnology, University of Cambridge, Pembroke Street, U.K","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5100388546"],"corresponding_institution_ids":["https://openalex.org/I87445476"],"apc_list":null,"apc_paid":null,"fwci":0.1313,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.52209152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5904501676559448},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.572546124458313},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5501474142074585},{"id":"https://openalex.org/keywords/metabolite","display_name":"Metabolite","score":0.5230356454849243},{"id":"https://openalex.org/keywords/biomarker-discovery","display_name":"Biomarker discovery","score":0.5138214230537415},{"id":"https://openalex.org/keywords/flux","display_name":"Flux (metallurgy)","score":0.4920608401298523},{"id":"https://openalex.org/keywords/biomarker","display_name":"Biomarker","score":0.47774118185043335},{"id":"https://openalex.org/keywords/metabolomics","display_name":"Metabolomics","score":0.4179805517196655},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.37467384338378906},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26148486137390137},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1878025233745575},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.15176764130592346},{"id":"https://openalex.org/keywords/proteomics","display_name":"Proteomics","score":0.119943767786026},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09556946158409119}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5904501676559448},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.572546124458313},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5501474142074585},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.5230356454849243},{"id":"https://openalex.org/C124535831","wikidata":"https://www.wikidata.org/wiki/Q4915074","display_name":"Biomarker discovery","level":4,"score":0.5138214230537415},{"id":"https://openalex.org/C68709404","wikidata":"https://www.wikidata.org/wiki/Q1134475","display_name":"Flux (metallurgy)","level":2,"score":0.4920608401298523},{"id":"https://openalex.org/C2781197716","wikidata":"https://www.wikidata.org/wiki/Q864574","display_name":"Biomarker","level":2,"score":0.47774118185043335},{"id":"https://openalex.org/C21565614","wikidata":"https://www.wikidata.org/wiki/Q12149006","display_name":"Metabolomics","level":2,"score":0.4179805517196655},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.37467384338378906},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26148486137390137},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1878025233745575},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.15176764130592346},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.119943767786026},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09556946158409119},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/isb.2012.6314103","is_oa":false,"landing_page_url":"https://doi.org/10.1109/isb.2012.6314103","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 IEEE 6th International Conference on Systems Biology (ISB)","raw_type":"proceedings-article"},{"id":"pmh:oai:hub.hku.hk:10722/165342","is_oa":false,"landing_page_url":"http://hdl.handle.net/10722/165342","pdf_url":null,"source":{"id":"https://openalex.org/S4377196271","display_name":"The HKU Scholars Hub (University of Hong Kong)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I889458895","host_organization_name":"University of Hong Kong","host_organization_lineage":["https://openalex.org/I889458895"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference_Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W76280356","https://openalex.org/W133158124","https://openalex.org/W1485000605","https://openalex.org/W1553833389","https://openalex.org/W1561767438","https://openalex.org/W1561844010","https://openalex.org/W1834683238","https://openalex.org/W1966589279","https://openalex.org/W1981668065","https://openalex.org/W1983120620","https://openalex.org/W2000478369","https://openalex.org/W2006884874","https://openalex.org/W2026089579","https://openalex.org/W2038639306","https://openalex.org/W2042884236","https://openalex.org/W2043165123","https://openalex.org/W2072964965","https://openalex.org/W2076262841","https://openalex.org/W2080549123","https://openalex.org/W2095001124","https://openalex.org/W2099999179","https://openalex.org/W2101701509","https://openalex.org/W2102273507","https://openalex.org/W2104108767","https://openalex.org/W2105525072","https://openalex.org/W2122144032","https://openalex.org/W2125629031","https://openalex.org/W2144725199","https://openalex.org/W2145508116","https://openalex.org/W2152841019","https://openalex.org/W2152922562","https://openalex.org/W2154061034","https://openalex.org/W2156382259","https://openalex.org/W2483478311","https://openalex.org/W4233524588","https://openalex.org/W4241598169","https://openalex.org/W4254187374","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W3084209502","https://openalex.org/W1988419672","https://openalex.org/W112583468","https://openalex.org/W2030335929","https://openalex.org/W4396746942","https://openalex.org/W96119380","https://openalex.org/W2788856035","https://openalex.org/W3023706879","https://openalex.org/W1969082909","https://openalex.org/W4298030740"],"abstract_inverted_index":{"Metabolites":[0],"can":[1,116],"serve":[2],"as":[3],"biomarkers":[4,54],"and":[5,17,22,60],"their":[6],"identification":[7],"has":[8],"significant":[9,84],"importance":[10],"in":[11,40,108],"the":[12,81,106,109,121],"study":[13],"of":[14,38,83,123],"biochemical":[15,28],"reaction":[16],"signalling":[18],"networks.":[19],"Incorporating":[20],"metabolic":[21,53,85],"gene":[23,62],"expression":[24,63],"data":[25,59],"to":[26,51,74,93,120],"reveal":[27],"networks":[29],"is":[30,71,90],"a":[31,36,48],"considerable":[32],"challenge,":[33],"which":[34],"attracts":[35],"lot":[37],"attention":[39],"recent":[41],"research.":[42],"In":[43],"this":[44],"paper,":[45],"we":[46],"propose":[47],"promising":[49],"approach":[50,89,114],"identify":[52],"through":[55],"integrating":[56],"available":[57],"biomedical":[58],"disease-specific":[61],"data.":[64],"A":[65,87],"Linear":[66],"Programming":[67],"(LP)":[68],"based":[69],"method":[70],"then":[72,101],"utilized":[73],"determine":[75],"flux":[76],"variability":[77],"intervals,":[78],"therefore":[79],"enabling":[80],"analysis":[82],"reactions.":[86],"statistical":[88],"also":[91,117],"presented":[92],"uncover":[94],"these":[95],"metabolites.":[96],"The":[97,112],"identified":[98],"metabolites":[99],"are":[100],"verified":[102],"by":[103],"comparing":[104],"with":[105],"results":[107],"existing":[110],"literature.":[111],"proposed":[113],"here":[115],"be":[118],"applied":[119],"discovery":[122],"potential":[124],"novel":[125],"biomarkers.":[126]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
