{"id":"https://openalex.org/W2151343930","doi":"https://doi.org/10.1109/iri.2008.4583057","title":"An ontology-empowered model for annotating protein-protein interaction data: a case study for budding yeast","display_name":"An ontology-empowered model for annotating protein-protein interaction data: a case study for budding yeast","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W2151343930","doi":"https://doi.org/10.1109/iri.2008.4583057","mag":"2151343930"},"language":"en","primary_location":{"id":"doi:10.1109/iri.2008.4583057","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iri.2008.4583057","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Conference on Information Reuse and Integration","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057391353","display_name":"Arash Shaban\u2010Nejad","orcid":"https://orcid.org/0000-0003-2047-4759"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Arash Shaban-Nejad","raw_affiliation_strings":["Department Computer Science and Software Engineering, Concordia University, Montreal, QUE, Canada"],"affiliations":[{"raw_affiliation_string":"Department Computer Science and Software Engineering, Concordia University, Montreal, QUE, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5071571704","display_name":"Volker Haarslev","orcid":"https://orcid.org/0000-0002-1669-7813"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Volker Haarslev","raw_affiliation_strings":["Department Computer Science and Software Engineering, Concordia University, Montreal, QUE, Canada"],"affiliations":[{"raw_affiliation_string":"Department Computer Science and Software Engineering, Concordia University, Montreal, QUE, Canada","institution_ids":["https://openalex.org/I60158472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5057391353"],"corresponding_institution_ids":["https://openalex.org/I60158472"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.13440471,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"4","issue":null,"first_page":"357","last_page":"362"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9811000227928162,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7804228663444519},{"id":"https://openalex.org/keywords/budding-yeast","display_name":"Budding yeast","score":0.762779712677002},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7381575107574463},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.42267242074012756},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.41593965888023376},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3506065607070923},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33083319664001465},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.3125556409358978},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.13527178764343262},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.12552785873413086},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.11367678642272949},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11010625958442688}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7804228663444519},{"id":"https://openalex.org/C2992884146","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Budding yeast","level":4,"score":0.762779712677002},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7381575107574463},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.42267242074012756},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.41593965888023376},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3506065607070923},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33083319664001465},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.3125556409358978},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.13527178764343262},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.12552785873413086},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.11367678642272949},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11010625958442688},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/iri.2008.4583057","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iri.2008.4583057","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Conference on Information Reuse and Integration","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.148.4026","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.148.4026","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://users.encs.concordia.ca/~haarslev/publications/IRI2008.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W90854953","https://openalex.org/W588337119","https://openalex.org/W641940164","https://openalex.org/W1482602274","https://openalex.org/W1497698611","https://openalex.org/W1512766599","https://openalex.org/W1527927437","https://openalex.org/W1533214753","https://openalex.org/W1545112702","https://openalex.org/W1595072919","https://openalex.org/W1598008721","https://openalex.org/W1668158506","https://openalex.org/W1670748022","https://openalex.org/W1737733244","https://openalex.org/W1998931880","https://openalex.org/W2001969264","https://openalex.org/W2006927892","https://openalex.org/W2071744657","https://openalex.org/W2071818582","https://openalex.org/W2084619201","https://openalex.org/W2093547815","https://openalex.org/W2096525273","https://openalex.org/W2107751776","https://openalex.org/W2111973517","https://openalex.org/W2144000913","https://openalex.org/W2149519710","https://openalex.org/W2151326548","https://openalex.org/W2158012724","https://openalex.org/W2160948978","https://openalex.org/W2166558964","https://openalex.org/W2170652857","https://openalex.org/W3148170550","https://openalex.org/W4230903726","https://openalex.org/W6603653790","https://openalex.org/W6630663215","https://openalex.org/W6635544609","https://openalex.org/W6637555261","https://openalex.org/W7073612800"],"related_works":["https://openalex.org/W2001703407","https://openalex.org/W2909148680","https://openalex.org/W2284058717","https://openalex.org/W2159818280","https://openalex.org/W2114954739","https://openalex.org/W2140329110","https://openalex.org/W1794266373","https://openalex.org/W2889792096","https://openalex.org/W1506177826","https://openalex.org/W1830516355"],"abstract_inverted_index":{"This":[0,26],"paper":[1],"reports":[2],"on":[3],"our":[4],"experience":[5],"in":[6],"modeling":[7],"and":[8,14,41,47,49],"employing":[9],"ontology-inferred":[10],"knowledge":[11,24],"to":[12,35,54],"support":[13],"improve":[15],"data":[16,40],"mining":[17],"tasks":[18],"of":[19,37],"yeast":[20],"protein":[21],"interactions":[22],"for":[23],"discovery.":[25],"objective":[27],"has":[28],"been":[29],"accomplished":[30],"by":[31],"providing":[32],"simplified":[33],"access":[34],"units":[36],"intersecting":[38],"proteome":[39],"information":[42],"from":[43,57],"different":[44],"biological":[45],"databases":[46],"bio-ontologies,":[48],"utilizing":[50],"a":[51],"logical":[52],"framework":[53],"answer":[55],"questions":[56],"biologists.":[58]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
