{"id":"https://openalex.org/W3111595459","doi":"https://doi.org/10.1109/ipta50016.2020.9286463","title":"Sorting cells from fluorescent markers organization in confocal microscopy: 3D versus 2D images","display_name":"Sorting cells from fluorescent markers organization in confocal microscopy: 3D versus 2D images","publication_year":2020,"publication_date":"2020-11-09","ids":{"openalex":"https://openalex.org/W3111595459","doi":"https://doi.org/10.1109/ipta50016.2020.9286463","mag":"3111595459"},"language":"en","primary_location":{"id":"doi:10.1109/ipta50016.2020.9286463","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipta50016.2020.9286463","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 Tenth International Conference on Image Processing Theory, Tools and Applications (IPTA)","raw_type":"proceedings-article"},"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101623363","display_name":"Ali Ahmad","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210115445","display_name":"Laboratoire Angevin de Recherche en Math\u00e9matiques","ror":"https://ror.org/036j0y719","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210115445","https://openalex.org/I4210141950","https://openalex.org/I49451733"]},{"id":"https://openalex.org/I4210138704","display_name":"Centre de Recherche en Acquisition et Traitement de l'Image pour la Sant\u00e9","ror":"https://ror.org/03smk3872","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210095849","https://openalex.org/I4210100596","https://openalex.org/I4210105738","https://openalex.org/I4210138704","https://openalex.org/I4210159245","https://openalex.org/I4405259976","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ali Ahmad","raw_affiliation_strings":["CREATIS, Universit\u00e9 de Lyon, Lyon, France","CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Sant\u00e9 (7 avenue Jean Capelle, Bat Blaise Pascal, 69621 Villeurbanne Cedex - France)","LARIS - Laboratoire Angevin de Recherche en Ing\u00e9nierie des Syst\u00e8mes (Universit\u00e9 d'Angers, LARIS | Polytech Angers, 62 Avenue Notre Dame du Lac - 49000 Angers - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREATIS, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I4210138704","https://openalex.org/I100532134"]},{"raw_affiliation_string":"CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Sant\u00e9 (7 avenue Jean Capelle, Bat Blaise Pascal, 69621 Villeurbanne Cedex - France)","institution_ids":["https://openalex.org/I4210138704"]},{"raw_affiliation_string":"LARIS - Laboratoire Angevin de Recherche en Ing\u00e9nierie des Syst\u00e8mes (Universit\u00e9 d'Angers, LARIS | Polytech Angers, 62 Avenue Notre Dame du Lac - 49000 Angers - France)","institution_ids":["https://openalex.org/I4210115445","https://openalex.org/I49451733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072554919","display_name":"Carole Frindel","orcid":"https://orcid.org/0000-0003-4570-0994"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210138704","display_name":"Centre de Recherche en Acquisition et Traitement de l'Image pour la Sant\u00e9","ror":"https://ror.org/03smk3872","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210095849","https://openalex.org/I4210100596","https://openalex.org/I4210105738","https://openalex.org/I4210138704","https://openalex.org/I4210159245","https://openalex.org/I4405259976","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Carole Frindel","raw_affiliation_strings":["CREATIS, Universit\u00e9 de Lyon, Lyon, France","CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Sant\u00e9 (7 avenue Jean Capelle, Bat Blaise Pascal, 69621 Villeurbanne Cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREATIS, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I4210138704","https://openalex.org/I100532134"]},{"raw_affiliation_string":"CREATIS - Centre de Recherche en Acquisition et Traitement de l'Image pour la Sant\u00e9 (7 avenue Jean Capelle, Bat Blaise Pascal, 69621 Villeurbanne Cedex - France)","institution_ids":["https://openalex.org/I4210138704"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101899914","display_name":"David Rousseau","orcid":"https://orcid.org/0000-0002-7935-1609"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210115445","display_name":"Laboratoire Angevin de Recherche en Math\u00e9matiques","ror":"https://ror.org/036j0y719","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210115445","https://openalex.org/I4210141950","https://openalex.org/I49451733"]},{"id":"https://openalex.org/I4210138704","display_name":"Centre de Recherche en Acquisition et Traitement de l'Image pour la Sant\u00e9","ror":"https://ror.org/03smk3872","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210095849","https://openalex.org/I4210100596","https://openalex.org/I4210105738","https://openalex.org/I4210138704","https://openalex.org/I4210159245","https://openalex.org/I4405259976","https://openalex.org/I48430043"]},{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"David Rousseau","raw_affiliation_strings":["CREATIS, Universit\u00e9 de Lyon, Lyon, France","LARIS - Laboratoire Angevin de Recherche en Ing\u00e9nierie des Syst\u00e8mes (Universit\u00e9 d'Angers, LARIS | Polytech Angers, 62 Avenue Notre Dame du Lac - 49000 Angers - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CREATIS, Universit\u00e9 de Lyon, Lyon, France","institution_ids":["https://openalex.org/I4210138704","https://openalex.org/I100532134"]},{"raw_affiliation_string":"LARIS - Laboratoire Angevin de Recherche en Ing\u00e9nierie des Syst\u00e8mes (Universit\u00e9 d'Angers, LARIS | Polytech Angers, 62 Avenue Notre Dame du Lac - 49000 Angers - France)","institution_ids":["https://openalex.org/I4210115445","https://openalex.org/I49451733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.2259,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.74736772,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"1","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.7641298174858093},{"id":"https://openalex.org/keywords/confocal-microscopy","display_name":"Confocal microscopy","score":0.7056184411048889},{"id":"https://openalex.org/keywords/sorting","display_name":"Sorting","score":0.6274433135986328},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.6246448755264282},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.6035229563713074},{"id":"https://openalex.org/keywords/microscope","display_name":"Microscope","score":0.542542576789856},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.5425352454185486},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.5257212519645691},{"id":"https://openalex.org/keywords/cell-sorting","display_name":"Cell sorting","score":0.5184511542320251},{"id":"https://openalex.org/keywords/spatial-organization","display_name":"Spatial organization","score":0.45840293169021606},{"id":"https://openalex.org/keywords/cardinal-point","display_name":"Cardinal point","score":0.42157602310180664},{"id":"https://openalex.org/keywords/lens","display_name":"Lens (geology)","score":0.4164985418319702},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.41379866003990173},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39332517981529236},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3474383056163788},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.25022080540657043},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.218634694814682},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.21300575137138367},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.18646454811096191},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.08210650086402893}],"concepts":[{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.7641298174858093},{"id":"https://openalex.org/C2779178360","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal microscopy","level":2,"score":0.7056184411048889},{"id":"https://openalex.org/C111696304","wikidata":"https://www.wikidata.org/wiki/Q2303697","display_name":"Sorting","level":2,"score":0.6274433135986328},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.6246448755264282},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.6035229563713074},{"id":"https://openalex.org/C67649825","wikidata":"https://www.wikidata.org/wiki/Q196538","display_name":"Microscope","level":2,"score":0.542542576789856},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.5425352454185486},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5257212519645691},{"id":"https://openalex.org/C2778630268","wikidata":"https://www.wikidata.org/wiki/Q17113277","display_name":"Cell sorting","level":3,"score":0.5184511542320251},{"id":"https://openalex.org/C175779824","wikidata":"https://www.wikidata.org/wiki/Q7574078","display_name":"Spatial organization","level":2,"score":0.45840293169021606},{"id":"https://openalex.org/C138395690","wikidata":"https://www.wikidata.org/wiki/Q376733","display_name":"Cardinal point","level":2,"score":0.42157602310180664},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.4164985418319702},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.41379866003990173},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39332517981529236},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3474383056163788},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.25022080540657043},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.218634694814682},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.21300575137138367},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.18646454811096191},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.08210650086402893},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/ipta50016.2020.9286463","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipta50016.2020.9286463","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 Tenth International Conference on Image Processing Theory, Tools and Applications (IPTA)","raw_type":"proceedings-article"},{"id":"pmh:oai:HAL:hal-03068381v1","is_oa":false,"landing_page_url":"https://univ-angers.hal.science/hal-03068381","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2020 Tenth International Conference on Image Processing Theory, Tools and Applications (IPTA), Nov 2020, Paris, France. pp.1-6, ⟨10.1109/IPTA50016.2020.9286463⟩","raw_type":"Conference papers"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W1538838686","https://openalex.org/W1601798363","https://openalex.org/W1640678802","https://openalex.org/W1988906448","https://openalex.org/W2001427978","https://openalex.org/W2004610693","https://openalex.org/W2016691315","https://openalex.org/W2021473911","https://openalex.org/W2053270078","https://openalex.org/W2070509435","https://openalex.org/W2072072671","https://openalex.org/W2074451549","https://openalex.org/W2076446466","https://openalex.org/W2084133980","https://openalex.org/W2090356912","https://openalex.org/W2108702314","https://openalex.org/W2115737236","https://openalex.org/W2120598546","https://openalex.org/W2131638344","https://openalex.org/W2139916508","https://openalex.org/W2161291416","https://openalex.org/W2338484021","https://openalex.org/W2585920126","https://openalex.org/W2597274540","https://openalex.org/W2792477743","https://openalex.org/W2939345579","https://openalex.org/W3009184695","https://openalex.org/W3028538478","https://openalex.org/W3044583775","https://openalex.org/W4233212295"],"related_works":["https://openalex.org/W2726111829","https://openalex.org/W4250585504","https://openalex.org/W2008049857","https://openalex.org/W1978803831","https://openalex.org/W2105513520","https://openalex.org/W2580002495","https://openalex.org/W2056668469","https://openalex.org/W82035557","https://openalex.org/W4285171187","https://openalex.org/W1884877925"],"abstract_inverted_index":{"We":[0,72],"consider":[1],"the":[2,27,34,39,53,56,74,84,91,96,104,110],"problem":[3,17],"of":[4,32,42,55,58,83,90,95,109],"sorting":[5],"cells":[6],"from":[7],"fluorescent":[8,64],"markers":[9,65],"spatial":[10,40,59],"organization":[11,24,41,60],"via":[12],"single":[13],"cell":[14,46],"microscopy.":[15],"This":[16],"is":[18,100],"important":[19],"in":[20],"bioimaging":[21],"since":[22],"this":[23,49],"can":[25],"reflect":[26],"healthy":[28],"or":[29,38,67],"pathological":[30],"state":[31],"cells,":[33],"chromatin":[35],"chain":[36],"configurations":[37],"DNA":[43],"during":[44],"main":[45],"cycle.":[47],"In":[48],"work,":[50],"we":[51],"address":[52],"question":[54],"detection":[57],"differences":[61],"according":[62],"to":[63],"density":[66],"distribution":[68],"using":[69],"textural":[70],"features.":[71],"compare":[73],"performances":[75],"by":[76,102],"simulating":[77],"3D":[78],"images":[79,82],"and":[80],"2D":[81],"focal":[85],"plane":[86],"with":[87],"various":[88],"size":[89],"point":[92],"spread":[93],"function":[94],"confocal":[97],"microscope,":[98],"that":[99],"determined":[101],"varying":[103],"numerical":[105],"aperture":[106],"N":[107],"A":[108],"used":[111],"objective":[112],"lens.":[113]},"counts_by_year":[{"year":2021,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}