{"id":"https://openalex.org/W2154011109","doi":"https://doi.org/10.1109/ipdps.2008.4536411","title":"Designing and parameterizing a workflow for optimization: A case study in biomedical imaging","display_name":"Designing and parameterizing a workflow for optimization: A case study in biomedical imaging","publication_year":2008,"publication_date":"2008-04-01","ids":{"openalex":"https://openalex.org/W2154011109","doi":"https://doi.org/10.1109/ipdps.2008.4536411","mag":"2154011109"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2008.4536411","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2008.4536411","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Symposium on Parallel and Distributed Processing","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101673411","display_name":"Virendra Kumar","orcid":"https://orcid.org/0000-0003-2234-1546"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Vijay S. Kumar","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030152493","display_name":"Mary Hall","orcid":"https://orcid.org/0000-0002-3058-7573"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mary Hall","raw_affiliation_strings":["University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080664764","display_name":"Jihie Kim","orcid":"https://orcid.org/0000-0003-2358-4021"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jihie Kim","raw_affiliation_strings":["University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040878653","display_name":"Yolanda Gil","orcid":"https://orcid.org/0000-0001-8465-8341"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yolanda Gil","raw_affiliation_strings":["University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037383891","display_name":"Tahsin Kur\u00e7","orcid":"https://orcid.org/0000-0001-9237-4306"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tahsin Kurc","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031941569","display_name":"Ewa Deelman","orcid":"https://orcid.org/0000-0001-5106-503X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ewa Deelman","raw_affiliation_strings":["University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068092761","display_name":"Varun Ratnakar","orcid":"https://orcid.org/0000-0001-9381-705X"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Varun Ratnakar","raw_affiliation_strings":["University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA"],"affiliations":[{"raw_affiliation_string":"University of Southern, California Information Sciences Institute, Marina del Rey, CA, USA","institution_ids":["https://openalex.org/I1174212"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111457939","display_name":"Joel Saltz","orcid":null},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Saltz","raw_affiliation_strings":["Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, The Ohio State University, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5101673411"],"corresponding_institution_ids":["https://openalex.org/I52357470"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.19289698,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9710000157356262,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.9254090785980225},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8382140398025513},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.7197409868240356},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.6215025186538696},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5492302775382996},{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.5162827372550964},{"id":"https://openalex.org/keywords/workflow-management-system","display_name":"Workflow management system","score":0.47428661584854126},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4517884850502014},{"id":"https://openalex.org/keywords/workflow-technology","display_name":"Workflow technology","score":0.43551182746887207},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.420604944229126},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1797056496143341},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16174817085266113}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.9254090785980225},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8382140398025513},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.7197409868240356},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.6215025186538696},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5492302775382996},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.5162827372550964},{"id":"https://openalex.org/C140824633","wikidata":"https://www.wikidata.org/wiki/Q2808660","display_name":"Workflow management system","level":3,"score":0.47428661584854126},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4517884850502014},{"id":"https://openalex.org/C19612761","wikidata":"https://www.wikidata.org/wiki/Q8034836","display_name":"Workflow technology","level":3,"score":0.43551182746887207},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.420604944229126},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1797056496143341},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16174817085266113},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ipdps.2008.4536411","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2008.4536411","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2008 IEEE International Symposium on Parallel and Distributed Processing","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Decent work and economic growth","score":0.4399999976158142,"id":"https://metadata.un.org/sdg/8"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1983001103","https://openalex.org/W2007451249","https://openalex.org/W2057298723","https://openalex.org/W2103068771","https://openalex.org/W2124679016","https://openalex.org/W2129666400","https://openalex.org/W3143672912","https://openalex.org/W6678271983"],"related_works":["https://openalex.org/W2391168633","https://openalex.org/W2385499106","https://openalex.org/W2035995658","https://openalex.org/W2376671203","https://openalex.org/W2375304607","https://openalex.org/W2049143847","https://openalex.org/W1574425962","https://openalex.org/W2354357087","https://openalex.org/W2353477037","https://openalex.org/W2387628393"],"abstract_inverted_index":{"This":[0],"paper":[1],"describes":[2],"our":[3,61,97],"experience":[4],"to":[5,19,32,74],"date":[6],"employing":[7],"the":[8,29,65,77,87,102],"systematic":[9,56],"mapping":[10],"and":[11,21,49,53,111],"optimization":[12,47],"of":[13,28,36,79,89,104],"large-":[14],"scale":[15],"scientific":[16],"application":[17,40,80,93],"workflows":[18],"current":[20],"future":[22,114],"parallel":[23,72],"platforms.":[24],"The":[25],"overall":[26],"goal":[27],"project":[30],"is":[31],"integrate":[33],"a":[34,55,90,95],"set":[35,103],"system":[37],"layers":[38],"-":[39,52],"program,":[41],"compiler,":[42],"run-time":[43],"environment,":[44],"knowledge":[45],"representation,":[46],"framework,":[48],"workflow":[50,59],"manager":[51],"through":[54],"strategy":[57],"for":[58,108,113],"mapping,":[60],"approach":[62],"will":[63],"exploit":[64],"vast":[66],"machine":[67],"resources":[68],"available":[69],"in":[70,100],"such":[71],"platforms":[73],"dramatically":[75],"increase":[76],"productivity":[78],"programmers.":[81],"In":[82],"this":[83,109],"paper,":[84],"we":[85],"describe":[86],"representation":[88],"biomedical":[91],"imaging":[92],"as":[94],"workflow,":[96],"early":[98],"experiences":[99],"integrating":[101],"tools":[105],"brought":[106],"together":[107],"project,":[110],"implications":[112],"applications.":[115]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
