{"id":"https://openalex.org/W2138041924","doi":"https://doi.org/10.1109/ipdps.2007.370529","title":"Scalable, Dynamic Analysis and Visualization for Genomic Datasets","display_name":"Scalable, Dynamic Analysis and Visualization for Genomic Datasets","publication_year":2007,"publication_date":"2007-01-01","ids":{"openalex":"https://openalex.org/W2138041924","doi":"https://doi.org/10.1109/ipdps.2007.370529","mag":"2138041924"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2007.370529","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2007.370529","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5103954420","display_name":"Grant Wallace","orcid":null},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Grant Wallace","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA","Dept. of Comput. Sci., Princeton Univ., NJ#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Princeton Univ., NJ#TAB#","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007835627","display_name":"Matthew Hibbs","orcid":"https://orcid.org/0000-0002-5020-5683"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matthew Hibbs","raw_affiliation_strings":["Princeton University, Princeton, NJ, US","Dept. of Comput. Sci., Princeton Univ., NJ#TAB#"],"affiliations":[{"raw_affiliation_string":"Princeton University, Princeton, NJ, US","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Princeton Univ., NJ#TAB#","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038039561","display_name":"Maitreya J. Dunham","orcid":"https://orcid.org/0000-0001-9944-2666"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Maitreya Dunham","raw_affiliation_strings":["Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA","@Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544. maitreya@princeton.edu"],"affiliations":[{"raw_affiliation_string":"Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"@Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544. maitreya@princeton.edu","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007149840","display_name":"Rachel Sealfon","orcid":"https://orcid.org/0000-0002-3007-4698"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rachel Sealfon","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA","Department of Computer Science, Princeton University, Princeton, New Jersey 08544. sealfon@princeton.edu"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, New Jersey 08544. sealfon@princeton.edu","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025250742","display_name":"Olga G. Troyanskaya","orcid":"https://orcid.org/0000-0002-5676-5737"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Olga Troyanskaya","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, New Jersey 08544; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544. ogt@princeton.edu"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, New Jersey 08544; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544. ogt@princeton.edu","institution_ids":["https://openalex.org/I20089843"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100399870","display_name":"Kai Li","orcid":"https://orcid.org/0000-0002-2095-7024"},"institutions":[{"id":"https://openalex.org/I20089843","display_name":"Princeton University","ror":"https://ror.org/00hx57361","country_code":"US","type":"education","lineage":["https://openalex.org/I20089843"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kai Li","raw_affiliation_strings":["Department of Computer Science, Princeton University, Princeton, NJ, USA","Department of Computer Science, Princeton University, Princeton, New Jersey 08544. li@princeton.edu"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, NJ, USA","institution_ids":["https://openalex.org/I20089843"]},{"raw_affiliation_string":"Department of Computer Science, Princeton University, Princeton, New Jersey 08544. li@princeton.edu","institution_ids":["https://openalex.org/I20089843"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5103954420"],"corresponding_institution_ids":["https://openalex.org/I20089843"],"apc_list":null,"apc_paid":null,"fwci":0.1309,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.53413209,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"34","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9876000285148621,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8226912021636963},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7878175973892212},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.7201699614524841},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.6421656012535095},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6116164326667786},{"id":"https://openalex.org/keywords/software-visualization","display_name":"Software visualization","score":0.5984693765640259},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.504585862159729},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.5022182464599609},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5007894039154053},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4333066940307617},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.419478178024292},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33060014247894287},{"id":"https://openalex.org/keywords/software-development","display_name":"Software development","score":0.3221718668937683},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.1735982894897461},{"id":"https://openalex.org/keywords/component-based-software-engineering","display_name":"Component-based software engineering","score":0.13291168212890625}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8226912021636963},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7878175973892212},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.7201699614524841},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.6421656012535095},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6116164326667786},{"id":"https://openalex.org/C4379982","wikidata":"https://www.wikidata.org/wiki/Q1273511","display_name":"Software visualization","level":5,"score":0.5984693765640259},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.504585862159729},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.5022182464599609},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5007894039154053},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4333066940307617},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.419478178024292},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33060014247894287},{"id":"https://openalex.org/C529173508","wikidata":"https://www.wikidata.org/wiki/Q638608","display_name":"Software development","level":3,"score":0.3221718668937683},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.1735982894897461},{"id":"https://openalex.org/C174683762","wikidata":"https://www.wikidata.org/wiki/Q609588","display_name":"Component-based software engineering","level":4,"score":0.13291168212890625},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ipdps.2007.370529","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2007.370529","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2007 IEEE International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.4099999964237213}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W45534775","https://openalex.org/W1912468900","https://openalex.org/W2018444363","https://openalex.org/W2103017472","https://openalex.org/W2112464428","https://openalex.org/W2136947295","https://openalex.org/W2137683543","https://openalex.org/W2138199375","https://openalex.org/W2142218318","https://openalex.org/W2146264532","https://openalex.org/W2157445661","https://openalex.org/W2159686118","https://openalex.org/W2167149779","https://openalex.org/W2951514321","https://openalex.org/W6639843417","https://openalex.org/W6684410638"],"related_works":["https://openalex.org/W4390608645","https://openalex.org/W4247566972","https://openalex.org/W4394895745","https://openalex.org/W2960264696","https://openalex.org/W3090563135","https://openalex.org/W2497432351","https://openalex.org/W4206777497","https://openalex.org/W4293280164","https://openalex.org/W2127156638","https://openalex.org/W171991278"],"abstract_inverted_index":{"A":[0],"challenge":[1],"in":[2],"data":[3,35,62],"analysis":[4,36,63],"and":[5,13,37,64,104],"visualization":[6,38,65],"is":[7,28,89],"to":[8,15,29,32,43,58],"build":[9],"new-generation":[10,34],"software":[11,26,52],"tools":[12,53,81],"systems":[14],"truly":[16],"accelerate":[17],"scientific":[18],"discoveries.":[19],"The":[20],"recent":[21],"focus":[22],"of":[23,66],"Princeton's":[24,83],"next-generation":[25],"project":[27],"investigate":[30],"how":[31],"develop":[33],"capabilities":[39],"for":[40,86],"genomic":[41,46],"scientists":[42],"analyze":[44],"high-throughput":[45],"datasets.":[47],"This":[48],"paper":[49],"describes":[50],"the":[51,79],"we":[54],"have":[55],"recently":[56],"developed":[57],"enable":[59],"dynamic,":[60],"large-scale":[61],"multiple":[67,99],"datasets":[68],"on":[69],"large-scale,":[70],"high-resolution":[71],"display":[72],"wall":[73],"systems.":[74],"Our":[75],"initial":[76],"experience":[77],"with":[78,112],"deployed":[80],"at":[82],"Lewis-Sigler":[84],"Institute":[85],"Integrative":[87],"Genomics":[88],"very":[90],"encouraging.":[91],"Scientists":[92],"can":[93],"effectively":[94],"learn":[95],"new":[96,102,106],"knowledge":[97],"from":[98],"datasets,":[100],"find":[101],"insights,":[103],"generate":[105],"hypotheses":[107],"that":[108],"are":[109],"not":[110],"possible":[111],"current":[113],"methods.":[114]},"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
