{"id":"https://openalex.org/W3150677990","doi":"https://doi.org/10.1109/ipdps.2006.1639532","title":"Some initial results on hardware BLAST acceleration with a reconfigurable architecture","display_name":"Some initial results on hardware BLAST acceleration with a reconfigurable architecture","publication_year":2006,"publication_date":"2006-01-01","ids":{"openalex":"https://openalex.org/W3150677990","doi":"https://doi.org/10.1109/ipdps.2006.1639532","mag":"3150677990"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2006.1639532","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2006.1639532","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 20th IEEE International Parallel & Distributed Processing Symposium","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113700477","display_name":"Euripides Sotiriades","orcid":null},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"E. Sotiriades","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece","institution_ids":["https://openalex.org/I55741626"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088317076","display_name":"Christos Kozanitis","orcid":"https://orcid.org/0000-0003-3566-1610"},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"C. Kozanitis","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece","institution_ids":["https://openalex.org/I55741626"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056983242","display_name":"Apostolos Dollas","orcid":null},"institutions":[{"id":"https://openalex.org/I55741626","display_name":"Technical University of Crete","ror":"https://ror.org/03f8bz564","country_code":"GR","type":"education","lineage":["https://openalex.org/I55741626"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"A. Dollas","raw_affiliation_strings":["Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece"],"affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, Technical University of Crete, Chania, Greece","institution_ids":["https://openalex.org/I55741626"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5113700477"],"corresponding_institution_ids":["https://openalex.org/I55741626"],"apc_list":null,"apc_paid":null,"fwci":1.96482842,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.88753066,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"2438","issue":null,"first_page":"8 pp.","last_page":"8 pp."},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7024853825569153},{"id":"https://openalex.org/keywords/acceleration","display_name":"Acceleration","score":0.680759847164154},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.6279781460762024},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.6212292313575745},{"id":"https://openalex.org/keywords/reconfigurable-computing","display_name":"Reconfigurable computing","score":0.5794824361801147},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.526756227016449},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.49484747648239136},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4861728549003601},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.4573577642440796},{"id":"https://openalex.org/keywords/cluster","display_name":"Cluster (spacecraft)","score":0.4480111598968506},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4476875960826874},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4216618239879608},{"id":"https://openalex.org/keywords/pattern-matching","display_name":"Pattern matching","score":0.42045503854751587},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.3797655999660492},{"id":"https://openalex.org/keywords/computer-hardware","display_name":"Computer hardware","score":0.3369746804237366},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1540687382221222},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.11277291178703308},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08226528763771057},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.07068684697151184}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7024853825569153},{"id":"https://openalex.org/C117896860","wikidata":"https://www.wikidata.org/wiki/Q11376","display_name":"Acceleration","level":2,"score":0.680759847164154},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.6279781460762024},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.6212292313575745},{"id":"https://openalex.org/C142962650","wikidata":"https://www.wikidata.org/wiki/Q240838","display_name":"Reconfigurable computing","level":3,"score":0.5794824361801147},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.526756227016449},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.49484747648239136},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4861728549003601},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.4573577642440796},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.4480111598968506},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4476875960826874},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4216618239879608},{"id":"https://openalex.org/C68859911","wikidata":"https://www.wikidata.org/wiki/Q1503724","display_name":"Pattern matching","level":2,"score":0.42045503854751587},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.3797655999660492},{"id":"https://openalex.org/C9390403","wikidata":"https://www.wikidata.org/wiki/Q3966","display_name":"Computer hardware","level":1,"score":0.3369746804237366},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1540687382221222},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.11277291178703308},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08226528763771057},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.07068684697151184},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ipdps.2006.1639532","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2006.1639532","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 20th IEEE International Parallel & Distributed Processing Symposium","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.7099999785423279,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320314786","display_name":"Xilinx","ror":"https://ror.org/01rb7bk56"},{"id":"https://openalex.org/F4320321917","display_name":"General Secretariat for Research and Technology","ror":"https://ror.org/04yeh8h63"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":11,"referenced_works":["https://openalex.org/W1570617259","https://openalex.org/W1594783879","https://openalex.org/W1905992590","https://openalex.org/W2015292449","https://openalex.org/W2023226967","https://openalex.org/W2062444839","https://openalex.org/W2087064593","https://openalex.org/W2103644816","https://openalex.org/W2142574874","https://openalex.org/W3140730966","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W1612076744","https://openalex.org/W2152074211","https://openalex.org/W2126857316","https://openalex.org/W2129019972","https://openalex.org/W3164085601","https://openalex.org/W1522032972","https://openalex.org/W2139962137","https://openalex.org/W2113308450","https://openalex.org/W2340647897","https://openalex.org/W3046541857"],"abstract_inverted_index":{"The":[0],"BLAST":[1,31,74],"algorithm":[2],"is":[3,8],"the":[4,67],"prevalent":[5],"tool":[6],"that":[7,25],"used":[9],"by":[10],"molecular":[11],"biologists":[12],"for":[13,60,66],"DNA":[14],"sequence":[15],"matching":[16],"and":[17,45,62],"database":[18],"search.":[19],"In":[20],"this":[21],"work":[22],"we":[23],"demonstrate":[24],"with":[26,36],"an":[27],"appropriate":[28],"reconfigurable":[29,73],"architecture,":[30],"performance":[32],"can":[33],"be":[34],"improved":[35],"a":[37,43,53,70],"single-chip":[38],"solution":[39],"5":[40],"times":[41,51],"over":[42,52],"specialized":[44],"optimized":[46],"computer":[47],"cluster,":[48],"or":[49],"37":[50],"single":[54],"computer.":[55],"These":[56],"initial":[57],"results":[58],"account":[59],"I/O":[61],"are":[63],"very":[64],"encouraging":[65],"development":[68],"of":[69],"large":[71],"scale,":[72],"engine":[75]},"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}