{"id":"https://openalex.org/W2115056479","doi":"https://doi.org/10.1109/ipdps.2004.1303210","title":"High performance computational tools for motif discovery","display_name":"High performance computational tools for motif discovery","publication_year":2004,"publication_date":"2004-06-10","ids":{"openalex":"https://openalex.org/W2115056479","doi":"https://doi.org/10.1109/ipdps.2004.1303210","mag":"2115056479"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2004.1303210","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2004.1303210","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"18th International Parallel and Distributed Processing Symposium, 2004. Proceedings.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066972005","display_name":"Nicole Baldwin","orcid":"https://orcid.org/0000-0002-4196-3554"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"N.E. Baldwin","raw_affiliation_strings":["Department of Computer Science, University of Tennessee, Knoxville, USA","Dept. of Comput. Sci., Tennessee Univ., TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Tennessee Univ., TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103490126","display_name":"R. Lorraine Collins","orcid":null},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R.L. Collins","raw_affiliation_strings":["Department of Computer Science, University of Tennessee, Knoxville, USA","Dept. of Comput. Sci., Tennessee Univ., TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Tennessee Univ., TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011863644","display_name":"Michael A. Langston","orcid":"https://orcid.org/0000-0001-5945-5796"},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.A. Langston","raw_affiliation_strings":["Department of Computer Science, University of Tennessee, Knoxville, USA","Dept. of Comput. Sci., Tennessee Univ., TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Tennessee Univ., TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055365897","display_name":"Christopher T. Symons","orcid":null},"institutions":[{"id":"https://openalex.org/I75027704","display_name":"University of Tennessee at Knoxville","ror":"https://ror.org/020f3ap87","country_code":"US","type":"education","lineage":["https://openalex.org/I75027704"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C.T. Symons","raw_affiliation_strings":["Department of Computer Science, University of Tennessee, Knoxville, USA","Dept. of Comput. Sci., Tennessee Univ., TN, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Tennessee, Knoxville, USA","institution_ids":["https://openalex.org/I75027704"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Tennessee Univ., TN, USA","institution_ids":["https://openalex.org/I75027704"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002795310","display_name":"Michael R. Leuze","orcid":null},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M.R. Leuze","raw_affiliation_strings":["Oak Ridge National Laboratory, USA","Oak Ridge National Laboratory"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, USA","institution_ids":["https://openalex.org/I1289243028"]},{"raw_affiliation_string":"Oak Ridge National Laboratory","institution_ids":["https://openalex.org/I1289243028"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5007918640","display_name":"Brynn H. Voy","orcid":"https://orcid.org/0000-0003-1923-9110"},"institutions":[{"id":"https://openalex.org/I1289243028","display_name":"Oak Ridge National Laboratory","ror":"https://ror.org/01qz5mb56","country_code":"US","type":"facility","lineage":["https://openalex.org/I1289243028","https://openalex.org/I1330989302","https://openalex.org/I39565521","https://openalex.org/I4210159294"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B.H. Voy","raw_affiliation_strings":["Oak Ridge National Laboratory, USA"],"affiliations":[{"raw_affiliation_string":"Oak Ridge National Laboratory, USA","institution_ids":["https://openalex.org/I1289243028"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5066972005"],"corresponding_institution_ids":["https://openalex.org/I75027704"],"apc_list":null,"apc_paid":null,"fwci":1.3264,"has_fulltext":false,"cited_by_count":26,"citation_normalized_percentile":{"value":0.78780562,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"122","issue":null,"first_page":"192","last_page":"199"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5985715985298157},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5956065058708191},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.5532134771347046},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4777107238769531},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4345777630805969},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.4279446005821228},{"id":"https://openalex.org/keywords/coding","display_name":"Coding (social sciences)","score":0.42002612352371216},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39962518215179443},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3567247688770294},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.19800284504890442},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.094952791929245}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5985715985298157},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5956065058708191},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.5532134771347046},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4777107238769531},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4345777630805969},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.4279446005821228},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.42002612352371216},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39962518215179443},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3567247688770294},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.19800284504890442},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.094952791929245},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/ipdps.2004.1303210","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2004.1303210","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"18th International Parallel and Distributed Processing Symposium, 2004. Proceedings.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.81.1060","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.81.1060","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.utk.edu/~langston/projects/papers/HiCOMB2004.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.49000000953674316,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W75155422","https://openalex.org/W247937228","https://openalex.org/W1511874048","https://openalex.org/W1519855763","https://openalex.org/W1549971742","https://openalex.org/W1580213736","https://openalex.org/W1592870802","https://openalex.org/W1627262848","https://openalex.org/W1956090332","https://openalex.org/W1998300401","https://openalex.org/W2003967338","https://openalex.org/W2032231928","https://openalex.org/W2036295979","https://openalex.org/W2037940015","https://openalex.org/W2048869777","https://openalex.org/W2056002855","https://openalex.org/W2070310544","https://openalex.org/W2073850887","https://openalex.org/W2083193728","https://openalex.org/W2103985802","https://openalex.org/W2106882534","https://openalex.org/W2107768450","https://openalex.org/W2110291136","https://openalex.org/W2110455321","https://openalex.org/W2117549173","https://openalex.org/W2121356022","https://openalex.org/W2138717237","https://openalex.org/W2141060672","https://openalex.org/W2152893838","https://openalex.org/W2154514071","https://openalex.org/W2160314966","https://openalex.org/W2164561653","https://openalex.org/W2168157737","https://openalex.org/W2913688336","https://openalex.org/W4292230561","https://openalex.org/W6632984525","https://openalex.org/W6634719314","https://openalex.org/W6635200387","https://openalex.org/W6641001594","https://openalex.org/W6659963394","https://openalex.org/W6669145357","https://openalex.org/W6682603391"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2605676258","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2902352756","https://openalex.org/W2377079823","https://openalex.org/W2599962286","https://openalex.org/W2319582300","https://openalex.org/W4400799920"],"abstract_inverted_index":{"Summary":[0],"form":[1],"only":[2],"given.":[3],"We":[4],"highlight":[5],"a":[6,82,110,128,136,146],"fruitful":[7],"interplay":[8],"between":[9,49],"biology":[10],"and":[11,48,55,71,102,157,177],"computation.":[12],"The":[13,85],"sequencing":[14],"of":[15,33,44,64,75,87,106,122,142,167,171,181,200],"complete":[16,88],"genomes":[17],"from":[18],"multiple":[19],"organisms":[20],"has":[21,132],"revealed":[22],"that":[23,36,58,67,126],"most":[24],"differences":[25],"in":[26,38,138,194],"organism":[27],"complexity":[28],"are":[29,161,173],"due":[30],"to":[31,98,187,196],"elements":[32,78],"gene":[34,107],"regulation":[35,108],"reside":[37],"the":[39,56,62,93,119,123,140,179],"non":[40],"protein":[41],"coding":[42],"portions":[43],"genes.":[45],"Both":[46],"within":[47],"species,":[50],"transcription":[51],"factor":[52],"binding":[53,100],"sites":[54,101],"proteins":[57],"recognize":[59],"them":[60],"govern":[61],"activity":[63],"cellular":[65],"pathways":[66],"mediate":[68],"adaptive":[69],"responses":[70],"survival.":[72],"Experimental":[73],"identification":[74,121,141],"these":[76],"regulatory":[77],"is":[79,145,165,192],"by":[80],"nature":[81],"slow":[83],"process.":[84],"availability":[86],"genomic":[89,111],"sequences,":[90],"however,":[91],"opens":[92],"door":[94],"for":[95],"computational":[96,120],"methods":[97],"predict":[99],"expedite":[103],"our":[104],"understanding":[105],"at":[109],"level.":[112],"Just":[113],"as":[114],"with":[115],"traditional":[116],"experimental":[117],"approaches,":[118],"molecular":[124],"factors":[125],"control":[127],"gene's":[129],"expression":[130],"level":[131],"been":[133],"problematic.":[134],"As":[135],"case":[137],"point,":[139],"putative":[143],"motifs":[144],"challenging":[147],"combinatorial":[148],"task.":[149],"For":[150],"it,":[151],"powerful":[152],"new":[153],"motif":[154],"finding":[155],"algorithms":[156],"high":[158],"performance":[159],"implementations":[160],"described.":[162],"Heavy":[163],"use":[164,180,199],"made":[166],"graph":[168],"algorithms,":[169],"some":[170],"which":[172],"exceedingly":[174],"computationally":[175],"intensive":[176],"involve":[178],"emergent":[182],"mathematical":[183],"methods.":[184],"An":[185],"approach":[186],"fully":[188],"dynamic":[189],"load":[190],"balancing":[191],"developed":[193],"order":[195],"make":[197],"effective":[198],"highly":[201],"parallel":[202],"platforms.":[203]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}