{"id":"https://openalex.org/W2163404107","doi":"https://doi.org/10.1109/ipdps.2004.1303209","title":"Identification of mycobacterium species using curated custom databases","display_name":"Identification of mycobacterium species using curated custom databases","publication_year":2004,"publication_date":"2004-06-10","ids":{"openalex":"https://openalex.org/W2163404107","doi":"https://doi.org/10.1109/ipdps.2004.1303209","mag":"2163404107"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2004.1303209","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2004.1303209","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"18th International Parallel and Distributed Processing Symposium, 2004. Proceedings.","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028146923","display_name":"Dan J. Kuyper","orcid":null},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"D. Kuyper","raw_affiliation_strings":["Department of Computer Science, University of Nebraska Omaha, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nebraska Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047703641","display_name":"Hesham Ali","orcid":"https://orcid.org/0000-0001-6675-7987"},"institutions":[{"id":"https://openalex.org/I122266389","display_name":"University of Nebraska at Omaha","ror":"https://ror.org/04yrkc140","country_code":"US","type":"education","lineage":["https://openalex.org/I122266389"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"H.H. Ali","raw_affiliation_strings":["Department of Computer Science, University of Nebraska Omaha, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Nebraska Omaha, Omaha, NE, USA","institution_ids":["https://openalex.org/I122266389"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103066724","display_name":"Amr M. Mohamed","orcid":"https://orcid.org/0000-0003-4330-3151"},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A.M. Mohamed","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA","institution_ids":["https://openalex.org/I59130452"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111613668","display_name":"S. H. Hinrichs","orcid":null},"institutions":[{"id":"https://openalex.org/I59130452","display_name":"University of Nebraska Medical Center","ror":"https://ror.org/00thqtb16","country_code":"US","type":"funder","lineage":["https://openalex.org/I59130452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S.H. Hinrichs","raw_affiliation_strings":["Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA"],"affiliations":[{"raw_affiliation_string":"Department of Pathology and Microbiology, University of Nebraska Medical Center, Omaha, NE, USA","institution_ids":["https://openalex.org/I59130452"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5028146923"],"corresponding_institution_ids":["https://openalex.org/I122266389"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15775099,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"42","issue":null,"first_page":"191","last_page":"197"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9240999817848206,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8216273784637451},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7335014343261719},{"id":"https://openalex.org/keywords/sequence-database","display_name":"Sequence database","score":0.5994356870651245},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5817291736602783},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5202637910842896},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4919383227825165},{"id":"https://openalex.org/keywords/sequence-analysis","display_name":"Sequence analysis","score":0.4841504693031311},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4801325500011444},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47277167439460754},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.422769695520401},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4071761667728424},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3821560740470886},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2615097165107727},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.14297932386398315},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08908295631408691},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.0794827938079834}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8216273784637451},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7335014343261719},{"id":"https://openalex.org/C41584329","wikidata":"https://www.wikidata.org/wiki/Q175902","display_name":"Sequence database","level":3,"score":0.5994356870651245},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5817291736602783},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5202637910842896},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4919383227825165},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.4841504693031311},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4801325500011444},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47277167439460754},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.422769695520401},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4071761667728424},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3821560740470886},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2615097165107727},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.14297932386398315},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08908295631408691},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0794827938079834},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/ipdps.2004.1303209","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2004.1303209","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"18th International Parallel and Distributed Processing Symposium, 2004. Proceedings.","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.74.6437","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.74.6437","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.hicomb.org/papers/HICOMB2004-08.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5099999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1517693791","https://openalex.org/W1589993665","https://openalex.org/W1975914194","https://openalex.org/W1988582839","https://openalex.org/W2016613682","https://openalex.org/W2055043387","https://openalex.org/W2071259488","https://openalex.org/W2078761998","https://openalex.org/W2100180946","https://openalex.org/W2104417772","https://openalex.org/W2465768006","https://openalex.org/W3189819657","https://openalex.org/W4236236547","https://openalex.org/W4247964656"],"related_works":["https://openalex.org/W4229706141","https://openalex.org/W2150215096","https://openalex.org/W4238935654","https://openalex.org/W4232188079","https://openalex.org/W2384605093","https://openalex.org/W1530540721","https://openalex.org/W2163261777","https://openalex.org/W2373528557","https://openalex.org/W2028473472","https://openalex.org/W2353952613"],"abstract_inverted_index":{"Summary":[0],"form":[1],"only":[2],"given.":[3],"Advances":[4],"in":[5,10,43,50],"molecular":[6],"biology":[7],"have":[8],"resulted":[9],"the":[11,28,38,41,54,112,136,160,209,215],"development":[12,85],"of":[13,45,59,76,95,114,122,135,145,200,205,231],"diagnostic":[14],"tests":[15],"for":[16,37,70,133,162,203,229],"infectious":[17,96],"diseases":[18,97],"based":[19,25,32,61,224],"on":[20,194],"genetic":[21,108,123,219],"profiles.":[22],"While":[23],"probe":[24],"assays":[26,33],"dominate":[27],"field":[29],"today,":[30],"sequence":[31,46,60,72,109,154,164],"hold":[34],"great":[35],"promise":[36],"future.":[39],"However,":[40],"variability":[42],"quality":[44],"information":[47,170],"currently":[48],"present":[49],"public":[51],"databases":[52,78,116],"limits":[53],"potential":[55],"growth":[56],"and":[57,74,100,149,152,182,217],"use":[58],"analysis.":[62],"To":[63],"address":[64],"this":[65,88],"problem":[66],"a":[67,84,90,118,127,221],"standardized":[68],"method":[69],"DNA":[71],"validation":[73,155],"building":[75],"custom":[77,137,185],"was":[79,98],"developed":[80,99],"using":[81],"mycobacterium":[82,207,232],"as":[83],"model.":[86],"With":[87],"model,":[89],"computational":[91],"approach":[92,187,225],"to":[93,126,175,179,208,214],"identification":[94,110,144,204,230],"evaluated.":[101],"The":[102,131,157,184],"Web-based":[103],"application,":[104],"termed":[105],"BioDatabase,":[106],"accomplished":[107],"via":[111],"creation":[113,134],"curated":[115,222],"containing":[117],"relatively":[119],"small":[120],"set":[121],"data":[124],"specific":[125],"species":[128,210],"or":[129],"group.":[130],"process":[132,158],"database":[138,186],"included":[139],"multiple":[140,163],"steps":[141],"beginning":[142],"with":[143,166,191],"highly":[146],"conserved":[147],"start":[148],"end":[150],"sequences":[151,202],"intervening":[153],"parameters.":[156],"eliminated":[159],"need":[161],"alignment":[165],"GenBank":[167],"sequences,":[168],"whose":[169],"is":[171],"valuable,":[172],"yet":[173],"difficult":[174],"properly":[176],"utilize":[177],"due":[178],"its":[180],"size":[181],"quality.":[183],"maximized":[188],"application":[189],"performance":[190],"minimal":[192],"impact":[193],"analysis":[195],"response":[196],"time,":[197],"allowing":[198],"investigation":[199],"optimal":[201],"all":[206],"level.":[211],"In":[212],"comparison":[213],"16S":[216],"ITS":[218,223],"regions,":[220],"proved":[226],"most":[227],"effective":[228],"isolates.":[233]},"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
