{"id":"https://openalex.org/W1664565359","doi":"https://doi.org/10.1109/ipdps.2003.1213384","title":"Expresso and chips: creating a next generation microarray experiment management system","display_name":"Expresso and chips: creating a next generation microarray experiment management system","publication_year":2004,"publication_date":"2004-03-22","ids":{"openalex":"https://openalex.org/W1664565359","doi":"https://doi.org/10.1109/ipdps.2003.1213384","mag":"1664565359"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2003.1213384","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2003.1213384","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060565928","display_name":"Allan A. Sioson","orcid":"https://orcid.org/0000-0003-1696-4560"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"A. Sioson","raw_affiliation_strings":["Department of Computer Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Blacksburg, VA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070743615","display_name":"Jonathan I. Watkinson","orcid":"https://orcid.org/0000-0002-8163-9927"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J.I. Watkinson","raw_affiliation_strings":["Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079316116","display_name":"Cecilia V\u00e1squez-Robinet","orcid":"https://orcid.org/0000-0002-5166-0477"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"C. Vasquez-Robinet","raw_affiliation_strings":["Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060765850","display_name":"Margaret Ellis","orcid":"https://orcid.org/0000-0003-3959-4304"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Ellis","raw_affiliation_strings":["Department of Computer Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Blacksburg, VA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040025864","display_name":"Maulik Shukla","orcid":"https://orcid.org/0009-0002-3396-5725"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"M. Shukla","raw_affiliation_strings":["Department of Computer Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Blacksburg, VA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112072345","display_name":"Deept Kumar","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"D. Kumar","raw_affiliation_strings":["Department of Computer Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Blacksburg, VA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035052603","display_name":"Naren Ramakrishnan","orcid":"https://orcid.org/0000-0002-1821-9743"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"N. Ramakrishnan","raw_affiliation_strings":["Department of Computer Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Blacksburg, VA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057291575","display_name":"Lenwood S. Heath","orcid":"https://orcid.org/0000-0003-1608-431X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L.S. Heath","raw_affiliation_strings":["Department of Computer Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Blacksburg, VA, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043746493","display_name":"Ruth Grene","orcid":"https://orcid.org/0000-0001-8205-6232"},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Grene","raw_affiliation_strings":["Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084471810","display_name":"Boris I. Chevone","orcid":null},"institutions":[{"id":"https://openalex.org/I859038795","display_name":"Virginia Tech","ror":"https://ror.org/02smfhw86","country_code":"US","type":"education","lineage":["https://openalex.org/I859038795"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"B.I. Chevone","raw_affiliation_strings":["Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Plant Pathology, Physiology, and Weed Science, Blacksburg, VA, USA","institution_ids":["https://openalex.org/I859038795"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010237794","display_name":"Karen Kafadar","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"K. Kafadar","raw_affiliation_strings":["Department of Statistics, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Statistics, Blacksburg, VA, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068161656","display_name":"Layne T. Watson","orcid":"https://orcid.org/0000-0003-2009-107X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"L.T. Watson","raw_affiliation_strings":["Department of Computer Science, Blacksburg, VA, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Blacksburg, VA, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5060565928"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.8441,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.69154248,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9948999881744385,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7161520719528198},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5230435132980347},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5006604194641113},{"id":"https://openalex.org/keywords/protocol","display_name":"Protocol (science)","score":0.48924875259399414},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.44186562299728394},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.43214577436447144},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4055328965187073},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3677877187728882},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.35155975818634033},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10050588846206665}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7161520719528198},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5230435132980347},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5006604194641113},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.48924875259399414},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.44186562299728394},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.43214577436447144},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4055328965187073},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3677877187728882},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.35155975818634033},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10050588846206665},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/ipdps.2003.1213384","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2003.1213384","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.2.4598","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.2.4598","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.cs.vt.edu/~ramakris/papers/ipdps2003.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W645906854","https://openalex.org/W1445129317","https://openalex.org/W1555797260","https://openalex.org/W1587289137","https://openalex.org/W1652529314","https://openalex.org/W1969285898","https://openalex.org/W1974648751","https://openalex.org/W1976829642","https://openalex.org/W1981309637","https://openalex.org/W1992242907","https://openalex.org/W1994345591","https://openalex.org/W2002440736","https://openalex.org/W2002810210","https://openalex.org/W2028558168","https://openalex.org/W2034065427","https://openalex.org/W2034132675","https://openalex.org/W2040482262","https://openalex.org/W2045430208","https://openalex.org/W2055043387","https://openalex.org/W2059844821","https://openalex.org/W2069062374","https://openalex.org/W2071395250","https://openalex.org/W2072056570","https://openalex.org/W2092686336","https://openalex.org/W2093017030","https://openalex.org/W2126012074","https://openalex.org/W2138049764","https://openalex.org/W2150926065","https://openalex.org/W2156031219","https://openalex.org/W2158096909","https://openalex.org/W2165011536","https://openalex.org/W3088523391","https://openalex.org/W4233622718","https://openalex.org/W4236236547","https://openalex.org/W4240274257","https://openalex.org/W6783959504","https://openalex.org/W6992044497","https://openalex.org/W7023811732"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2795079307","https://openalex.org/W2793058541","https://openalex.org/W1983629434","https://openalex.org/W2055929693","https://openalex.org/W2443844466","https://openalex.org/W4324271173","https://openalex.org/W1967645776","https://openalex.org/W2352227742","https://openalex.org/W4390679071"],"abstract_inverted_index":{"Expresso":[0,52],"is":[1,7],"an":[2],"experiment":[3,118],"management":[4],"system":[5],"that":[6],"designed":[8],"to":[9,25,78,85,113],"assist":[10],"biologists":[11],"in":[12,51,105],"planning,":[13],"executing,":[14],"and":[15,42,65,84,121],"interpreting":[16],"microarray":[17,47,96],"experiments.":[18,97],"It":[19],"serves":[20],"as":[21,31,87],"a":[22],"unifying":[23],"framework":[24],"study":[26],"data-driven":[27],"application":[28,114,116],"composition":[29],"systems,":[30],"envisaged":[32],"under":[33],"the":[34,46,75,92,106,123],"NSF":[35],"Next":[36],"Generation":[37],"Software":[38],"(NGS)":[39],"program.":[40],"Physical":[41],"analytical":[43],"stages":[44,94],"of":[45,95,108],"process":[48,77],"are":[49,70],"mirrored":[50],"with":[53,110],"computational":[54],"models":[55,69],"from":[56],"biophysics,":[57],"molecular":[58],"biology,":[59],"biochemistry,":[60],"robotics,":[61],"image":[62],"processing,":[63],"statistics,":[64],"knowledge":[66],"representation.":[67],"These":[68],"pushed":[71],"deeper":[72],"(earlier)":[73],"into":[74],"design":[76,82,107],"help":[79],"avoid":[80],"costly":[81],"errors":[83],"provide,":[86],"needed,":[88],"surrogate":[89],"functions":[90],"for":[91],"traditional":[93],"In":[98],"this":[99],"paper,":[100],"we":[101],"describe":[102],"ongoing":[103],"work":[104],"Expresso,":[109],"specific":[111],"reference":[112],"composition,":[115],"optimization,":[117],"protocol":[119],"design,":[120],"'closing":[122],"loop.'.":[124]},"counts_by_year":[],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
