{"id":"https://openalex.org/W2117722583","doi":"https://doi.org/10.1109/ipdps.2003.1213292","title":"PROSIDIS: a special purpose processor for protein similarity discovery","display_name":"PROSIDIS: a special purpose processor for protein similarity discovery","publication_year":2004,"publication_date":"2004-03-22","ids":{"openalex":"https://openalex.org/W2117722583","doi":"https://doi.org/10.1109/ipdps.2003.1213292","mag":"2117722583"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2003.1213292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2003.1213292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066798302","display_name":"A. Marongiu","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"A. Marongiu","raw_affiliation_strings":["IPITEC, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IPITEC, Rome, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069833889","display_name":"Paolo Palazzari","orcid":"https://orcid.org/0009-0003-2569-263X"},"institutions":[{"id":"https://openalex.org/I110120368","display_name":"National Agency for New Technologies, Energy and Sustainable Economic Development","ror":"https://ror.org/02an8es95","country_code":"IT","type":"government","lineage":["https://openalex.org/I110120368"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"P. Palazzari","raw_affiliation_strings":["Computing and Modeling Unit, ENEA, Rome, Italy","[Computing and Modeling Unit, ENEA, Rome, Italy]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing and Modeling Unit, ENEA, Rome, Italy","institution_ids":["https://openalex.org/I110120368"]},{"raw_affiliation_string":"[Computing and Modeling Unit, ENEA, Rome, Italy]","institution_ids":["https://openalex.org/I110120368"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082820996","display_name":"Vittorio Rosato","orcid":"https://orcid.org/0000-0003-4784-0069"},"institutions":[{"id":"https://openalex.org/I110120368","display_name":"National Agency for New Technologies, Energy and Sustainable Economic Development","ror":"https://ror.org/02an8es95","country_code":"IT","type":"government","lineage":["https://openalex.org/I110120368"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"V. Rosato","raw_affiliation_strings":["Computing and Modeling Unit, ENEA, Rome, Italy","[Computing and Modeling Unit, ENEA, Rome, Italy]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computing and Modeling Unit, ENEA, Rome, Italy","institution_ids":["https://openalex.org/I110120368"]},{"raw_affiliation_string":"[Computing and Modeling Unit, ENEA, Rome, Italy]","institution_ids":["https://openalex.org/I110120368"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"19","issue":null,"first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.8299214839935303},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.786589503288269},{"id":"https://openalex.org/keywords/microarchitecture","display_name":"Microarchitecture","score":0.6378539800643921},{"id":"https://openalex.org/keywords/string","display_name":"String (physics)","score":0.592519223690033},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5603419542312622},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5282620191574097},{"id":"https://openalex.org/keywords/nearest-neighbor-search","display_name":"Nearest neighbor search","score":0.4220777153968811},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.4161597490310669},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2943647503852844},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2730889320373535},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.16244426369667053},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.07286173105239868}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.8299214839935303},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.786589503288269},{"id":"https://openalex.org/C107598950","wikidata":"https://www.wikidata.org/wiki/Q259864","display_name":"Microarchitecture","level":2,"score":0.6378539800643921},{"id":"https://openalex.org/C157486923","wikidata":"https://www.wikidata.org/wiki/Q1376436","display_name":"String (physics)","level":2,"score":0.592519223690033},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5603419542312622},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5282620191574097},{"id":"https://openalex.org/C116738811","wikidata":"https://www.wikidata.org/wiki/Q608751","display_name":"Nearest neighbor search","level":2,"score":0.4220777153968811},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.4161597490310669},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2943647503852844},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2730889320373535},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.16244426369667053},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.07286173105239868},{"id":"https://openalex.org/C37914503","wikidata":"https://www.wikidata.org/wiki/Q156495","display_name":"Mathematical physics","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/ipdps.2003.1213292","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2003.1213292","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.12.7949","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.12.7949","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.hicomb.org/papers/HICOMB2003-08.pdf","raw_type":"text"},{"id":"pmh:oai:openarchive.enea.it:10840/7289","is_oa":false,"landing_page_url":"http://www.scopus.com/inward/record.url?eid=2-s2.0-84947263880&partnerID=40&md5=b3ad1b7a27a306b5d19b94476cbf422c","pdf_url":null,"source":{"id":"https://openalex.org/S4306400365","display_name":"ENEA Open Archive (National Agency for New Technologies, Energy and Sustainable Economic Development)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I110120368","host_organization_name":"National Agency for New Technologies, Energy and Sustainable Economic Development","host_organization_lineage":["https://openalex.org/I110120368"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Intervento a convegno"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1483075820","https://openalex.org/W1533157262","https://openalex.org/W1556147955","https://openalex.org/W1822968287","https://openalex.org/W1939805218","https://openalex.org/W1989081651","https://openalex.org/W2006169550","https://openalex.org/W2055043387","https://openalex.org/W2100816895","https://openalex.org/W2109588077","https://openalex.org/W2115294662","https://openalex.org/W2119766542","https://openalex.org/W2143210482","https://openalex.org/W2156274518","https://openalex.org/W4236236547","https://openalex.org/W6628908816","https://openalex.org/W6631818318"],"related_works":["https://openalex.org/W1505605100","https://openalex.org/W4286787697","https://openalex.org/W3043769852","https://openalex.org/W3210979406","https://openalex.org/W4308670360","https://openalex.org/W2950721324","https://openalex.org/W2051304374","https://openalex.org/W4200187525","https://openalex.org/W4291327800","https://openalex.org/W4230921427"],"abstract_inverted_index":{"This":[0],"work":[1,57],"presents":[2],"the":[3,15,31,34,39,42,69,79,87,92],"architecture":[4],"of":[5,17,33,41],"PROSIDIS,":[6],"a":[7,21,26,48,60],"special":[8,61],"purpose":[9,62],"processor":[10,89],"designed":[11,64],"to":[12,20,90],"search":[13],"for":[14],"occurrence":[16],"substrings":[18],"similar":[19],"given":[22],"'template":[23],"string'":[24],"within":[25,38],"proteome.":[27],"The":[28],"paper":[29],"recalls":[30],"basis":[32],"PHG":[35],"tool,":[36],"developed":[37],"framework":[40],"HADES":[43],"project,":[44],"which":[45,67],"automatically":[46],"designs":[47],"parallel":[49],"hardware":[50],"starting":[51],"from":[52],"recurrence":[53],"equations.":[54],"In":[55],"this":[56],"we":[58],"present":[59],"processor,":[63],"by":[65,82,86],"PHG,":[66],"faces":[68],"protein":[70,94],"similarity":[71],"discovery":[72],"problem.":[73,96],"Some":[74],"results":[75],"are":[76],"given,":[77],"reporting":[78],"time":[80],"spent":[81],"several":[83],"microprocessors":[84],"and":[85],"PROSIDIS":[88],"solve":[91],"same":[93],"analysis":[95]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
