{"id":"https://openalex.org/W2120381149","doi":"https://doi.org/10.1109/ipdps.2002.1016586","title":"Parallel genehunter: implementation of a linkage analysis package for distributed-memory architectures","display_name":"Parallel genehunter: implementation of a linkage analysis package for distributed-memory architectures","publication_year":2002,"publication_date":"2002-01-01","ids":{"openalex":"https://openalex.org/W2120381149","doi":"https://doi.org/10.1109/ipdps.2002.1016586","mag":"2120381149"},"language":"en","primary_location":{"id":"doi:10.1109/ipdps.2002.1016586","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2002.1016586","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 16th International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5041114077","display_name":"Gavin C. Conant","orcid":"https://orcid.org/0000-0002-8677-4933"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Conant","raw_affiliation_strings":["Department of Biology, University of New Mexico, USA","THE UNIVERSITY OF NEW MEXICO"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of New Mexico, USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"THE UNIVERSITY OF NEW MEXICO","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068520992","display_name":"Steven J. Plimpton","orcid":"https://orcid.org/0000-0003-2446-8209"},"institutions":[{"id":"https://openalex.org/I192454743","display_name":"Sandia National Laboratories California","ror":"https://ror.org/058m7ey48","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1330989302","https://openalex.org/I192454743","https://openalex.org/I198811213","https://openalex.org/I198811213","https://openalex.org/I4210104735"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S. Plimpton","raw_affiliation_strings":["Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA","[Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA","institution_ids":["https://openalex.org/I192454743"]},{"raw_affiliation_string":"[Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA]","institution_ids":["https://openalex.org/I192454743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062655634","display_name":"William Old","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I4210087413","display_name":"University of Colorado Health","ror":"https://ror.org/0107w4315","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087413"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Old","raw_affiliation_strings":["Health Sciences Center, University of Colorado, USA","[Health Sciences Center, University of Colorado, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Sciences Center, University of Colorado, USA","institution_ids":["https://openalex.org/I4210087413"]},{"raw_affiliation_string":"[Health Sciences Center, University of Colorado, USA]","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007820528","display_name":"Andreas Wagner","orcid":"https://orcid.org/0000-0001-5772-1261"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Wagner","raw_affiliation_strings":["Department of Biology, University of New Mexico, USA","Department of Biology , University of New Mexico , USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of New Mexico, USA","institution_ids":["https://openalex.org/I169521973"]},{"raw_affiliation_string":"Department of Biology , University of New Mexico , USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111969333","display_name":"Pamela R. Fain","orcid":null},"institutions":[{"id":"https://openalex.org/I188538660","display_name":"University of Colorado Boulder","ror":"https://ror.org/02ttsq026","country_code":"US","type":"education","lineage":["https://openalex.org/I188538660"]},{"id":"https://openalex.org/I4210087413","display_name":"University of Colorado Health","ror":"https://ror.org/0107w4315","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210087413"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"P. Fain","raw_affiliation_strings":["Health Sciences Center, University of Colorado, USA","[Health Sciences Center, University of Colorado, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Health Sciences Center, University of Colorado, USA","institution_ids":["https://openalex.org/I4210087413"]},{"raw_affiliation_string":"[Health Sciences Center, University of Colorado, USA]","institution_ids":["https://openalex.org/I188538660"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060340489","display_name":"Grant S. Heffelfinger","orcid":null},"institutions":[{"id":"https://openalex.org/I192454743","display_name":"Sandia National Laboratories California","ror":"https://ror.org/058m7ey48","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I1330989302","https://openalex.org/I192454743","https://openalex.org/I198811213","https://openalex.org/I198811213","https://openalex.org/I4210104735"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Heffelfinger","raw_affiliation_strings":["Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA","[Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA","institution_ids":["https://openalex.org/I192454743"]},{"raw_affiliation_string":"[Computation, Computers, and Mathematics Center, Sandia National Laboratories, USA]","institution_ids":["https://openalex.org/I192454743"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"7","issue":null,"first_page":"8 pp","last_page":"8 pp"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.984000027179718,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8483454585075378},{"id":"https://openalex.org/keywords/linkage","display_name":"Linkage (software)","score":0.6878536343574524},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6309509873390198},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6149140000343323},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5410913228988647},{"id":"https://openalex.org/keywords/distributed-memory","display_name":"Distributed memory","score":0.45195335149765015},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3340885639190674},{"id":"https://openalex.org/keywords/shared-memory","display_name":"Shared memory","score":0.33256715536117554},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.25410711765289307},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.14699801802635193}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8483454585075378},{"id":"https://openalex.org/C31266012","wikidata":"https://www.wikidata.org/wiki/Q6554340","display_name":"Linkage (software)","level":3,"score":0.6878536343574524},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6309509873390198},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6149140000343323},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5410913228988647},{"id":"https://openalex.org/C91481028","wikidata":"https://www.wikidata.org/wiki/Q1054686","display_name":"Distributed memory","level":3,"score":0.45195335149765015},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3340885639190674},{"id":"https://openalex.org/C133875982","wikidata":"https://www.wikidata.org/wiki/Q764810","display_name":"Shared memory","level":2,"score":0.33256715536117554},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.25410711765289307},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.14699801802635193},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ipdps.2002.1016586","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ipdps.2002.1016586","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Proceedings 16th International Parallel and Distributed Processing Symposium","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W96717503","https://openalex.org/W1982918926","https://openalex.org/W1991311566","https://openalex.org/W1998158007","https://openalex.org/W1999602116","https://openalex.org/W2038334497","https://openalex.org/W2068702161","https://openalex.org/W2069558876","https://openalex.org/W2107871825","https://openalex.org/W2136097639","https://openalex.org/W2165393391","https://openalex.org/W4235019056"],"related_works":["https://openalex.org/W4401278057","https://openalex.org/W2026512611","https://openalex.org/W1985165680","https://openalex.org/W4245497162","https://openalex.org/W2027852278","https://openalex.org/W2070983336","https://openalex.org/W1837558792","https://openalex.org/W2363502211","https://openalex.org/W1982466989","https://openalex.org/W2995170196"],"abstract_inverted_index":{"We":[0,31],"present":[1],"a":[2,83],"parallel":[3,74],"algorithm":[4,19,37,67],"for":[5,55,68],"performing":[6],"multipoint":[7],"linkage":[8,41],"analysis":[9,42],"of":[10,28,35,65,76],"genetic":[11],"marker":[12],"data":[13],"on":[14,51,80],"large":[15],"family":[16],"pedigrees.":[17],"The":[18],"effectively":[20],"distributes":[21],"both":[22],"the":[23,29,36,39,56,66],"computation":[24],"and":[25],"memory":[26,53],"requirements":[27],"analysis.":[30],"discuss":[32],"an":[33],"implementation":[34],"in":[38],"Genehunter":[40,47],"package":[43],"(version":[44],"2.1),":[45],"enabling":[46],"to":[48,82],"be":[49],"run":[50],"distributed":[52],"platforms":[54],"first":[57],"time.":[58],"Our":[59],"preliminary":[60],"benchmarks":[61],"indicate":[62],"reasonable":[63],"scalability":[64],"even":[69],"small":[70],"fixed-size":[71],"problems,":[72],"with":[73],"efficiencies":[75],"75%":[77],"or":[78],"more":[79],"up":[81],"few":[84],"dozen":[85],"processors.":[86]},"counts_by_year":[{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
