{"id":"https://openalex.org/W2140051882","doi":"https://doi.org/10.1109/infrkm.2012.6204990","title":"Automated biological pathway knowledge retrieval based on semantic web services composition and AI Planning","display_name":"Automated biological pathway knowledge retrieval based on semantic web services composition and AI Planning","publication_year":2012,"publication_date":"2012-03-01","ids":{"openalex":"https://openalex.org/W2140051882","doi":"https://doi.org/10.1109/infrkm.2012.6204990","mag":"2140051882"},"language":"en","primary_location":{"id":"doi:10.1109/infrkm.2012.6204990","is_oa":false,"landing_page_url":"https://doi.org/10.1109/infrkm.2012.6204990","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 International Conference on Information Retrieval &amp; Knowledge Management","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031916282","display_name":"Muhammad Akmal Remli","orcid":"https://orcid.org/0000-0002-7800-0057"},"institutions":[{"id":"https://openalex.org/I4576418","display_name":"University of Technology Malaysia","ror":"https://ror.org/026w31v75","country_code":"MY","type":"education","lineage":["https://openalex.org/I4576418"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Muhammad Akmal bin Remli","raw_affiliation_strings":["Department of Software Engineering, University Teknologi Malaysia, Skudai Johor, Malaysia","Department of Software Engineering, Faculty of Computer Science & Information System, University Teknologi Malaysia, Skudai, Johor, Malaysia"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, University Teknologi Malaysia, Skudai Johor, Malaysia","institution_ids":["https://openalex.org/I4576418"]},{"raw_affiliation_string":"Department of Software Engineering, Faculty of Computer Science & Information System, University Teknologi Malaysia, Skudai, Johor, Malaysia","institution_ids":["https://openalex.org/I4576418"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108483457","display_name":"Safaai Deris","orcid":null},"institutions":[{"id":"https://openalex.org/I4576418","display_name":"University of Technology Malaysia","ror":"https://ror.org/026w31v75","country_code":"MY","type":"education","lineage":["https://openalex.org/I4576418"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Safaai bin Deris","raw_affiliation_strings":["Department of Software Engineering, University Teknologi Malaysia, Skudai Johor, Malaysia","Department of Software Engineering, Faculty of Computer Science & Information System, University Teknologi Malaysia, Skudai, Johor, Malaysia"],"affiliations":[{"raw_affiliation_string":"Department of Software Engineering, University Teknologi Malaysia, Skudai Johor, Malaysia","institution_ids":["https://openalex.org/I4576418"]},{"raw_affiliation_string":"Department of Software Engineering, Faculty of Computer Science & Information System, University Teknologi Malaysia, Skudai, Johor, Malaysia","institution_ids":["https://openalex.org/I4576418"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5031916282"],"corresponding_institution_ids":["https://openalex.org/I4576418"],"apc_list":null,"apc_paid":null,"fwci":1.4211,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.87862073,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"4","issue":null,"first_page":"281","last_page":"284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10679","display_name":"Service-Oriented Architecture and Web Services","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9803000092506409,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7953815460205078},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5844645500183105},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.5601678490638733},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5284813642501831},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.44338175654411316},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.43726468086242676},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4222603440284729},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3892061710357666},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.10831677913665771},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.08320727944374084}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7953815460205078},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5844645500183105},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.5601678490638733},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5284813642501831},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.44338175654411316},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.43726468086242676},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4222603440284729},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3892061710357666},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.10831677913665771},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.08320727944374084},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/infrkm.2012.6204990","is_oa":false,"landing_page_url":"https://doi.org/10.1109/infrkm.2012.6204990","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2012 International Conference on Information Retrieval &amp; Knowledge Management","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities","score":0.5899999737739563}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":8,"referenced_works":["https://openalex.org/W1557644259","https://openalex.org/W1562877396","https://openalex.org/W1963833910","https://openalex.org/W2100988719","https://openalex.org/W2147357263","https://openalex.org/W2268603963","https://openalex.org/W6675301218","https://openalex.org/W6693236736"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W1984964356","https://openalex.org/W3120676751","https://openalex.org/W1923384484"],"abstract_inverted_index":{"This":[0],"paper":[1],"presents":[2],"the":[3,14,18,65,75,80,120,146,150],"experience":[4],"gained":[5],"on":[6,98],"semantic":[7],"web":[8,31],"service":[9,83],"composition":[10,81,86],"technique":[11],"applied":[12],"to":[13,39,73,143],"bioinformatics":[15],"domain.":[16],"Specifically,":[17],"approach":[19,106,124],"presented":[20],"here":[21],"consists":[22],"of":[23,49,82,122,154],"knowledge":[24,44,56],"retrieval":[25,45,133],"perspective":[26],"in":[27,115,130],"biological":[28],"pathway.":[29],"Semantic":[30],"services,":[32],"annotated":[33],"with":[34],"domain":[35],"ontology":[36],"are":[37],"used":[38],"describe":[40],"services":[41],"for":[42,46,107,134],"pathway":[43,131,147],"Kyoto":[47],"Encyclopedia":[48],"Gene":[50],"and":[51,64],"Genomes":[52],"(KEGG)":[53],"database.":[54],"Retrieving":[55],"can":[57,68],"be":[58,69],"seen":[59],"as":[60,87],"high":[61],"level":[62],"goals":[63],"tasks":[66],"involved":[67],"decomposed":[70],"into":[71],"subtask":[72],"achieve":[74],"specified":[76],"goals.":[77],"We":[78,118],"execute":[79],"by":[84,125],"treating":[85],"planning":[88,95],"problem":[89],"using":[90,111],"Hierarchical":[91,100],"Task":[92],"Network":[93],"(HTN)":[94],"system":[96],"based":[97],"Simple":[99],"Order":[101],"Planner":[102],"2":[103],"(SHOP2).":[104],"The":[105],"plan":[108],"(task)":[109],"decomposition":[110],"SHOP2":[112],"is":[113],"implemented":[114],"automated":[116],"way.":[117],"investigate":[119],"effectiveness":[121],"this":[123],"applying":[126],"real":[127],"world":[128],"scenario":[129],"information":[132],"Lactococcus":[135],"Lactis":[136],"(L.":[137],"lactis)":[138],"organism":[139],"where":[140],"biologists":[141],"need":[142],"find":[144],"out":[145],"description":[148],"from":[149],"given":[151],"specific":[152],"gene":[153],"interest.":[155]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
