{"id":"https://openalex.org/W2735332739","doi":"https://doi.org/10.1109/ijcnn.2017.7966165","title":"Top-down strategies for hierarchical classification of transposable elements with neural networks","display_name":"Top-down strategies for hierarchical classification of transposable elements with neural networks","publication_year":2017,"publication_date":"2017-05-01","ids":{"openalex":"https://openalex.org/W2735332739","doi":"https://doi.org/10.1109/ijcnn.2017.7966165","mag":"2735332739"},"language":"en","primary_location":{"id":"doi:10.1109/ijcnn.2017.7966165","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ijcnn.2017.7966165","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 International Joint Conference on Neural Networks (IJCNN)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057504672","display_name":"Felipe Kenji Nakano","orcid":"https://orcid.org/0000-0002-4884-9420"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Felipe Kenji Nakano","raw_affiliation_strings":["Department of Computer Science, Federal University of S\u00e3o Carlos, S\u00e3o Carlos, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Federal University of S\u00e3o Carlos, S\u00e3o Carlos, SP, Brazil","institution_ids":["https://openalex.org/I177909021"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090693796","display_name":"Walter Jos\u00e9 G. S. Pinto","orcid":null},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Walter Jose Pinto","raw_affiliation_strings":["Departrnent of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Departrnent of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009911024","display_name":"Gisele L. Pappa","orcid":"https://orcid.org/0000-0002-0349-4494"},"institutions":[{"id":"https://openalex.org/I110200422","display_name":"Universidade Federal de Minas Gerais","ror":"https://ror.org/0176yjw32","country_code":"BR","type":"education","lineage":["https://openalex.org/I110200422"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Gisele Lobo Pappa","raw_affiliation_strings":["Departrnent of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil"],"affiliations":[{"raw_affiliation_string":"Departrnent of Computer Science, Federal University of Minas Gerais, Belo Horizonte, MG, Brazil","institution_ids":["https://openalex.org/I110200422"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066866262","display_name":"Ricardo Cerri","orcid":"https://orcid.org/0000-0002-2582-1695"},"institutions":[{"id":"https://openalex.org/I177909021","display_name":"Universidade Federal de S\u00e3o Carlos","ror":"https://ror.org/00qdc6m37","country_code":"BR","type":"education","lineage":["https://openalex.org/I177909021"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ricardo Cerri","raw_affiliation_strings":["Department of Computer Science, Federal University of S\u00e3o Carlos, S\u00e3o Carlos, SP, Brazil"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Federal University of S\u00e3o Carlos, S\u00e3o Carlos, SP, Brazil","institution_ids":["https://openalex.org/I177909021"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5057504672"],"corresponding_institution_ids":["https://openalex.org/I177909021"],"apc_list":null,"apc_paid":null,"fwci":10.4383,"has_fulltext":false,"cited_by_count":43,"citation_normalized_percentile":{"value":0.97636328,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"2539","last_page":"2546"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9726999998092651,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.7352462410926819},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6745415925979614},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.6224449872970581},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.46832114458084106},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10556170344352722},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.06345784664154053}],"concepts":[{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.7352462410926819},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6745415925979614},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.6224449872970581},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.46832114458084106},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10556170344352722},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.06345784664154053},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/ijcnn.2017.7966165","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ijcnn.2017.7966165","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2017 International Joint Conference on Neural Networks (IJCNN)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"},{"id":"https://openalex.org/F4320322025","display_name":"Conselho Nacional de Desenvolvimento Cient\u00edfico e Tecnol\u00f3gico","ror":"https://ror.org/03swz6y49"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W59589783","https://openalex.org/W85880394","https://openalex.org/W172634345","https://openalex.org/W1519389931","https://openalex.org/W1522301498","https://openalex.org/W1563942368","https://openalex.org/W1967542092","https://openalex.org/W1969465720","https://openalex.org/W2021344630","https://openalex.org/W2033049603","https://openalex.org/W2059864757","https://openalex.org/W2071501400","https://openalex.org/W2108892946","https://openalex.org/W2113506551","https://openalex.org/W2129581281","https://openalex.org/W2130212962","https://openalex.org/W2132141594","https://openalex.org/W2135569230","https://openalex.org/W2150766729","https://openalex.org/W2163346964","https://openalex.org/W2163584430","https://openalex.org/W2165853036","https://openalex.org/W2166985665","https://openalex.org/W2168930979","https://openalex.org/W2169859562","https://openalex.org/W2311607323","https://openalex.org/W2338565478","https://openalex.org/W2344517839","https://openalex.org/W2414372196","https://openalex.org/W2520368209","https://openalex.org/W2522059325","https://openalex.org/W3151772809","https://openalex.org/W4205947740","https://openalex.org/W4236236547","https://openalex.org/W6603408101","https://openalex.org/W6607050106","https://openalex.org/W6703582540","https://openalex.org/W6704393125","https://openalex.org/W6793871564"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4237591666","https://openalex.org/W2103833188","https://openalex.org/W2164152191","https://openalex.org/W1534300978","https://openalex.org/W68905254","https://openalex.org/W2387589589","https://openalex.org/W2026307780","https://openalex.org/W1998760771","https://openalex.org/W2063677980"],"abstract_inverted_index":{"Transposable":[0,54],"Elements":[1,55],"are":[2,20],"DNA":[3],"sequences":[4],"that":[5,109],"can":[6,26],"move":[7],"from":[8],"one":[9],"place":[10],"to":[11,40,71],"another":[12],"inside":[13],"the":[14,28,45,96,124],"genome":[15],"of":[16,30,35,47],"a":[17,58],"cell.":[18],"They":[19],"important":[21],"for":[22,104],"genetic":[23],"variability,":[24],"and":[25,78,98],"modify":[27],"functionality":[29],"genes.":[31],"The":[32],"correct":[33],"classification":[34,56,83],"these":[36],"elements":[37],"is":[38],"crucial":[39],"understand":[41],"their":[42],"role":[43],"in":[44,95,123],"evolution":[46],"species.":[48],"In":[49],"this":[50],"paper,":[51],"we":[52],"investigate":[53],"as":[57],"Hierarchical":[59],"Classification":[60],"problem":[61],"using":[62,85,101],"Machine":[63,75],"Learning.":[64],"We":[65,88],"present":[66],"new":[67,80],"hierarchical":[68,81,105],"datasets":[69],"suitable":[70],"be":[72],"used":[73],"by":[74,120],"Learning":[76],"methods,":[77],"also":[79],"top-down":[82],"strategies":[84,91],"neural":[86],"networks.":[87],"compared":[89],"our":[90,110],"with":[92],"existing":[93],"ones":[94],"literature,":[97],"evaluated":[99],"them":[100],"measures":[102],"specific":[103],"problems.":[106],"Experiments":[107],"showed":[108],"proposal":[111],"achieved":[112],"better":[113],"or":[114],"competitive":[115],"results":[116],"than":[117],"those":[118],"found":[119],"other":[121],"methods":[122],"literature.":[125]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":11},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
