{"id":"https://openalex.org/W2003437690","doi":"https://doi.org/10.1109/ijcnn.2012.6252744","title":"Predicting protein-ligand binding site with differential evolution and support vector machine","display_name":"Predicting protein-ligand binding site with differential evolution and support vector machine","publication_year":2012,"publication_date":"2012-06-01","ids":{"openalex":"https://openalex.org/W2003437690","doi":"https://doi.org/10.1109/ijcnn.2012.6252744","mag":"2003437690"},"language":"en","primary_location":{"id":"doi:10.1109/ijcnn.2012.6252744","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ijcnn.2012.6252744","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2012 International Joint Conference on Neural Networks (IJCNN)","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051502105","display_name":"Ginny Y. Wong","orcid":null},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Ginny Y. Wong","raw_affiliation_strings":["Centre for Signal Processing, Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","Centre for Signal Processing, Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Signal Processing, Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Centre for Signal Processing, Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong#TAB#","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056524805","display_name":"F.H.F. Leung","orcid":"https://orcid.org/0000-0003-3921-7074"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Frank H.F. Leung","raw_affiliation_strings":["Centre for Signal Processing, Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","Centre for Signal Processing, Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Signal Processing, Department of Electronic and Information Engineering, Hong Kong Polytechnic University, Hong Kong, China","institution_ids":["https://openalex.org/I14243506"]},{"raw_affiliation_string":"Centre for Signal Processing, Department of Electronic and Information Engineering, The Hong Kong Polytechnic University, Hung Hom, Hong Kong#TAB#","institution_ids":["https://openalex.org/I14243506"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5079852457","display_name":"Sai Ho Ling","orcid":"https://orcid.org/0000-0003-0849-5098"},"institutions":[{"id":"https://openalex.org/I114017466","display_name":"University of Technology Sydney","ror":"https://ror.org/03f0f6041","country_code":"AU","type":"education","lineage":["https://openalex.org/I114017466"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Sai-Ho Ling","raw_affiliation_strings":["Centre for Health Technologies, Faculty of Engineering and Information Technology, University of Technology, Sydney, NSW, Australia","Centre for Health Technologies, Faculty of Engineering and Information Technology University of Technology, Sydney, NSW, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Health Technologies, Faculty of Engineering and Information Technology, University of Technology, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I114017466"]},{"raw_affiliation_string":"Centre for Health Technologies, Faculty of Engineering and Information Technology University of Technology, Sydney, NSW, Australia","institution_ids":["https://openalex.org/I114017466"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.11129486,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.866958498954773},{"id":"https://openalex.org/keywords/offset","display_name":"Offset (computer science)","score":0.5987104773521423},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5239522457122803},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5104576349258423},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4353678822517395},{"id":"https://openalex.org/keywords/differential-evolution","display_name":"Differential evolution","score":0.4133298397064209},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.39316749572753906},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.39107567071914673},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3881273567676544}],"concepts":[{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.866958498954773},{"id":"https://openalex.org/C175291020","wikidata":"https://www.wikidata.org/wiki/Q1156822","display_name":"Offset (computer science)","level":2,"score":0.5987104773521423},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5239522457122803},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5104576349258423},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4353678822517395},{"id":"https://openalex.org/C74750220","wikidata":"https://www.wikidata.org/wiki/Q2662197","display_name":"Differential evolution","level":2,"score":0.4133298397064209},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39316749572753906},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.39107567071914673},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3881273567676544},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/ijcnn.2012.6252744","is_oa":false,"landing_page_url":"https://doi.org/10.1109/ijcnn.2012.6252744","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The 2012 International Joint Conference on Neural Networks (IJCNN)","raw_type":"proceedings-article"},{"id":"pmh:oai:ira.lib.polyu.edu.hk:10397/33541","is_oa":false,"landing_page_url":"http://hdl.handle.net/10397/33541","pdf_url":null,"source":{"id":"https://openalex.org/S4306400205","display_name":"PolyU Institutional Research Archive (Hong Kong Polytechnic University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I14243506","host_organization_name":"Hong Kong Polytechnic University","host_organization_lineage":["https://openalex.org/I14243506"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"},{"id":"pmh:oai:opus.lib.uts.edu.au:10453/31510","is_oa":false,"landing_page_url":"http://hdl.handle.net/10453/31510","pdf_url":null,"source":{"id":"https://openalex.org/S4306401357","display_name":"UTS ePRESS (University of Technology Sydney)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114017466","host_organization_name":"University of Technology Sydney","host_organization_lineage":["https://openalex.org/I114017466"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Proceeding"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6000000238418579}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322598","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1540550673","https://openalex.org/W1542652324","https://openalex.org/W1561011671","https://openalex.org/W1571577887","https://openalex.org/W1595159159","https://openalex.org/W1607535733","https://openalex.org/W1652158306","https://openalex.org/W1708394971","https://openalex.org/W1879678483","https://openalex.org/W1963682048","https://openalex.org/W1965582988","https://openalex.org/W1967293793","https://openalex.org/W1977845138","https://openalex.org/W2031194866","https://openalex.org/W2043855224","https://openalex.org/W2058463742","https://openalex.org/W2066143642","https://openalex.org/W2087347434","https://openalex.org/W2091563009","https://openalex.org/W2097936772","https://openalex.org/W2104760790","https://openalex.org/W2108237355","https://openalex.org/W2108995755","https://openalex.org/W2112109058","https://openalex.org/W2128402268","https://openalex.org/W2130479394","https://openalex.org/W2132395520","https://openalex.org/W2138289501","https://openalex.org/W2154333184","https://openalex.org/W2169434145","https://openalex.org/W4230674625","https://openalex.org/W6636441879"],"related_works":["https://openalex.org/W2090763504","https://openalex.org/W148178222","https://openalex.org/W2104657898","https://openalex.org/W1948992892","https://openalex.org/W1886884218","https://openalex.org/W1910826599","https://openalex.org/W2012353789","https://openalex.org/W2530420969","https://openalex.org/W2051187167","https://openalex.org/W1980100242"],"abstract_inverted_index":{"Identification":[0],"of":[1,48,82],"protein-ligand":[2],"binding":[3,29],"site":[4],"is":[5,50,66,100,119,144],"an":[6],"important":[7,52],"task":[8],"in":[9],"structure-based":[10],"drug":[11],"design":[12],"and":[13,35,53,92,106,140],"docking":[14],"algorithms.":[15],"In":[16],"these":[17,44],"two":[18],"decades,":[19],"many":[20],"different":[21],"approaches":[22],"have":[23],"been":[24],"developed":[25,61],"to":[26,68,76,102,121,133,146],"predict":[27],"the":[28,39,46,56,70,80,93,96,103,107,124,148],"site,":[30],"such":[31],"as":[32],"geometric,":[33],"energetic":[34],"sequence-based":[36],"methods.":[37],"When":[38],"scores":[40],"are":[41,73,110],"calculated":[42],"from":[43,88],"methods,":[45],"method":[47],"classification":[49],"very":[51],"can":[54],"affect":[55],"prediction":[57],"results":[58],"greatly.":[59],"A":[60],"support":[62],"vector":[63],"machine":[64],"(SVM)":[65],"used":[67],"classify":[69],"pockets,":[71],"which":[72],"most":[74],"likely":[75],"bind":[77],"ligands":[78],"with":[79],"attributes":[81],"grid":[83],"value,":[84],"interaction":[85],"potential,":[86],"offset":[87],"protein,":[89],"conservation":[90],"score":[91],"information":[94],"around":[95],"pockets.":[97],"Since":[98],"SVM":[99],"sensitive":[101],"input":[104],"parameters":[105,126],"positive":[108],"samples":[109],"more":[111],"relevant":[112],"than":[113],"negative":[114],"samples,":[115],"differential":[116],"evolution":[117],"(DE)":[118],"applied":[120],"find":[122],"out":[123],"suitable":[125],"for":[127],"SVM.":[128],"We":[129],"compare":[130],"our":[131],"algorithm":[132,143],"four":[134],"other":[135],"approaches:":[136],"LIGSITE,":[137],"SURFNET,":[138],"PocketFinder":[139],"Concavity.":[141],"Our":[142],"found":[145],"provide":[147],"highest":[149],"success":[150],"rate.":[151]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
