{"id":"https://openalex.org/W3110830656","doi":"https://doi.org/10.1109/iisa50023.2020.9284412","title":"CRNet Translator: Building GMA, S-System Models and Chemical Reaction Networks of Disease and Metabolic Pathways","display_name":"CRNet Translator: Building GMA, S-System Models and Chemical Reaction Networks of Disease and Metabolic Pathways","publication_year":2020,"publication_date":"2020-07-15","ids":{"openalex":"https://openalex.org/W3110830656","doi":"https://doi.org/10.1109/iisa50023.2020.9284412","mag":"3110830656"},"language":"en","primary_location":{"id":"doi:10.1109/iisa50023.2020.9284412","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iisa50023.2020.9284412","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 11th International Conference on Information, Intelligence, Systems and Applications (IISA","raw_type":"proceedings-article"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042159287","display_name":"Karen T. Fields","orcid":null},"institutions":[{"id":"https://openalex.org/I5791819","display_name":"University of the Philippines Manila","ror":"https://ror.org/01rrczv41","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I5791819"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Karen T. Fields","raw_affiliation_strings":["University of the Philippines Manila,Department of Physical Sciences and Mathematics College of Arts and Sciences","Department of Physical Sciences and Mathematics College of Arts and Sciences, University of the Philippines Manila"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of the Philippines Manila,Department of Physical Sciences and Mathematics College of Arts and Sciences","institution_ids":["https://openalex.org/I5791819"]},{"raw_affiliation_string":"Department of Physical Sciences and Mathematics College of Arts and Sciences, University of the Philippines Manila","institution_ids":["https://openalex.org/I5791819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084518272","display_name":"Noel T. Fortun","orcid":"https://orcid.org/0000-0001-5474-0520"},"institutions":[{"id":"https://openalex.org/I5996616","display_name":"De La Salle University","ror":"https://ror.org/04xftk194","country_code":"PH","type":"education","lineage":["https://openalex.org/I5996616"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Noel Fortun","raw_affiliation_strings":["De La Salle University,Mathematics and Statistics Department,Manila,Philippines","Mathematics and Statistics Department, De La Salle University, Manila, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"De La Salle University,Mathematics and Statistics Department,Manila,Philippines","institution_ids":["https://openalex.org/I5996616"]},{"raw_affiliation_string":"Mathematics and Statistics Department, De La Salle University, Manila, Philippines","institution_ids":["https://openalex.org/I5996616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086938101","display_name":"Geoffrey A. Solano","orcid":"https://orcid.org/0000-0002-4223-1355"},"institutions":[{"id":"https://openalex.org/I5791819","display_name":"University of the Philippines Manila","ror":"https://ror.org/01rrczv41","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I5791819"]},{"id":"https://openalex.org/I87074743","display_name":"University of the Philippines Diliman","ror":"https://ror.org/03tbh6y23","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I87074743"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Geoffrey A. Solano","raw_affiliation_strings":["University of the Philippines Manila,Department of Physical Sciences and Mathematics College of Arts and Sciences","Department of Computer Science, College of Engineering, University of the Philippines Diliman","Department of Physical Sciences and Mathematics College of Arts and Sciences, University of the Philippines Manila"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of the Philippines Manila,Department of Physical Sciences and Mathematics College of Arts and Sciences","institution_ids":["https://openalex.org/I5791819"]},{"raw_affiliation_string":"Department of Computer Science, College of Engineering, University of the Philippines Diliman","institution_ids":["https://openalex.org/I87074743"]},{"raw_affiliation_string":"Department of Physical Sciences and Mathematics College of Arts and Sciences, University of the Philippines Manila","institution_ids":["https://openalex.org/I5791819"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036042109","display_name":"Angelyn R. Lao","orcid":"https://orcid.org/0000-0003-3028-9610"},"institutions":[{"id":"https://openalex.org/I5996616","display_name":"De La Salle University","ror":"https://ror.org/04xftk194","country_code":"PH","type":"education","lineage":["https://openalex.org/I5996616"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Angelyn Lao","raw_affiliation_strings":["De La Salle University,Mathematics and Statistics Department,Manila,Philippines","Mathematics and Statistics Department, De La Salle University, Manila, Philippines"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"De La Salle University,Mathematics and Statistics Department,Manila,Philippines","institution_ids":["https://openalex.org/I5996616"]},{"raw_affiliation_string":"Mathematics and Statistics Department, De La Salle University, Manila, Philippines","institution_ids":["https://openalex.org/I5996616"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.26864653,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"44","issue":null,"first_page":"1","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ode","display_name":"Ode","score":0.9259424209594727},{"id":"https://openalex.org/keywords/ordinary-differential-equation","display_name":"Ordinary differential equation","score":0.7737261652946472},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.7521535754203796},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5998885035514832},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5782313942909241},{"id":"https://openalex.org/keywords/encyclopedia","display_name":"Encyclopedia","score":0.5735927820205688},{"id":"https://openalex.org/keywords/metabolic-pathway","display_name":"Metabolic pathway","score":0.5002822875976562},{"id":"https://openalex.org/keywords/interpretation","display_name":"Interpretation (philosophy)","score":0.4691079258918762},{"id":"https://openalex.org/keywords/action","display_name":"Action (physics)","score":0.4583034813404083},{"id":"https://openalex.org/keywords/metabolic-network","display_name":"Metabolic network","score":0.45514610409736633},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.45512717962265015},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.42180556058883667},{"id":"https://openalex.org/keywords/differential-equation","display_name":"Differential equation","score":0.3860304057598114},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3233221173286438},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.29525116086006165},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2420012354850769},{"id":"https://openalex.org/keywords/applied-mathematics","display_name":"Applied mathematics","score":0.2352272868156433},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.19276732206344604},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1590261161327362},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.12622135877609253},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11592993140220642}],"concepts":[{"id":"https://openalex.org/C34862557","wikidata":"https://www.wikidata.org/wiki/Q178985","display_name":"Ode","level":2,"score":0.9259424209594727},{"id":"https://openalex.org/C51544822","wikidata":"https://www.wikidata.org/wiki/Q465274","display_name":"Ordinary differential equation","level":3,"score":0.7737261652946472},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.7521535754203796},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5998885035514832},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5782313942909241},{"id":"https://openalex.org/C148863701","wikidata":"https://www.wikidata.org/wiki/Q5292","display_name":"Encyclopedia","level":2,"score":0.5735927820205688},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.5002822875976562},{"id":"https://openalex.org/C527412718","wikidata":"https://www.wikidata.org/wiki/Q855395","display_name":"Interpretation (philosophy)","level":2,"score":0.4691079258918762},{"id":"https://openalex.org/C2780791683","wikidata":"https://www.wikidata.org/wiki/Q846785","display_name":"Action (physics)","level":2,"score":0.4583034813404083},{"id":"https://openalex.org/C101810790","wikidata":"https://www.wikidata.org/wiki/Q2263094","display_name":"Metabolic network","level":2,"score":0.45514610409736633},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.45512717962265015},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.42180556058883667},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.3860304057598114},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3233221173286438},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.29525116086006165},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2420012354850769},{"id":"https://openalex.org/C28826006","wikidata":"https://www.wikidata.org/wiki/Q33521","display_name":"Applied mathematics","level":1,"score":0.2352272868156433},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.19276732206344604},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1590261161327362},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.12622135877609253},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11592993140220642},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C161191863","wikidata":"https://www.wikidata.org/wiki/Q199655","display_name":"Library science","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iisa50023.2020.9284412","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iisa50023.2020.9284412","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2020 11th International Conference on Information, Intelligence, Systems and Applications (IISA","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1990476699","https://openalex.org/W2019582172","https://openalex.org/W2020051727","https://openalex.org/W2036058623","https://openalex.org/W2046254877","https://openalex.org/W2070714765","https://openalex.org/W2097389802","https://openalex.org/W2110256992","https://openalex.org/W2140567253","https://openalex.org/W2166438326","https://openalex.org/W2170697148","https://openalex.org/W2247350076","https://openalex.org/W2265281604","https://openalex.org/W2508823857","https://openalex.org/W2584450620","https://openalex.org/W2606992253","https://openalex.org/W2749479121","https://openalex.org/W2789304147","https://openalex.org/W2913399536","https://openalex.org/W3144526075","https://openalex.org/W6674409308","https://openalex.org/W6676545342","https://openalex.org/W6724903761","https://openalex.org/W6748580799"],"related_works":["https://openalex.org/W2977457557","https://openalex.org/W2158714033","https://openalex.org/W2072067873","https://openalex.org/W78967844","https://openalex.org/W2047632644","https://openalex.org/W2031492751","https://openalex.org/W3213185671","https://openalex.org/W4210989272","https://openalex.org/W4206945140","https://openalex.org/W4386628104"],"abstract_inverted_index":{"Ordinary":[0],"Differential":[1],"Equation":[2],"(ODE)":[3],"requires":[4],"the":[5,12,62,70,82,86],"use":[6],"of":[7,33,40,64,72,77,117],"differential":[8],"equations":[9],"to":[10,57,89,102,106],"describe":[11],"dynamically":[13],"changing":[14],"phenomena,":[15],"evolution,":[16],"and":[17,19,79,96,114],"variation":[18],"Chemical":[20],"Reaction":[21],"Network":[22],"(CRN)":[23],"is":[24],"a":[25,29,45],"model":[26,58],"that":[27],"gives":[28],"more":[30,108],"general":[31],"interpretation":[32],"biochemical":[34],"networks":[35,60],"as":[36],"it":[37],"ties":[38],"aspects":[39],"reaction":[41],"network":[42,112],"structure":[43,113],"in":[44,61],"precise":[46],"way.":[47],"In":[48],"this":[49,97],"study,":[50],"these":[51],"computational":[52],"approaches":[53],"can":[54,84,99],"be":[55,100],"used":[56],"biological":[59,118],"form":[63],"disease":[65],"or":[66,91],"metabolic":[67],"pathways.":[68],"Given":[69],"availability":[71],"data":[73],"from":[74],"Kyoto":[75],"Encyclopedia":[76],"Genes":[78],"Genomes":[80],"(KEGG),":[81],"application":[83],"convert":[85],"selected":[87],"pathways":[88],"S-system":[90],"Generalized":[92],"Mass-Action":[93],"(GMA)":[94],"ODE,":[95],"ODE":[98],"extended":[101],"its":[103],"corresponding":[104],"CRN":[105],"show":[107],"intimate":[109],"relationships":[110],"between":[111],"basic":[115],"phenomena":[116],"functions.":[119]},"counts_by_year":[],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
