{"id":"https://openalex.org/W2247350076","doi":"https://doi.org/10.1109/iisa.2015.7388007","title":"Generating phenograms using frequent structure mining over metabolic pathways","display_name":"Generating phenograms using frequent structure mining over metabolic pathways","publication_year":2015,"publication_date":"2015-07-01","ids":{"openalex":"https://openalex.org/W2247350076","doi":"https://doi.org/10.1109/iisa.2015.7388007","mag":"2247350076"},"language":"en","primary_location":{"id":"doi:10.1109/iisa.2015.7388007","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iisa.2015.7388007","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 6th International Conference on Information, Intelligence, Systems and Applications (IISA)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5000283543","display_name":"Lejun Christian L. Osorio","orcid":null},"institutions":[{"id":"https://openalex.org/I5791819","display_name":"University of the Philippines Manila","ror":"https://ror.org/01rrczv41","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I5791819"]}],"countries":["PH"],"is_corresponding":true,"raw_author_name":"Lejun Christian L. Osorio","raw_affiliation_strings":["Department of Physical Sciences and Mathematics, University of the Philippines, Manila"],"affiliations":[{"raw_affiliation_string":"Department of Physical Sciences and Mathematics, University of the Philippines, Manila","institution_ids":["https://openalex.org/I5791819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014895277","display_name":"Ma. Constancia O. Carillo","orcid":null},"institutions":[{"id":"https://openalex.org/I5791819","display_name":"University of the Philippines Manila","ror":"https://ror.org/01rrczv41","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I5791819"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Ma. Constancia O. Carillo","raw_affiliation_strings":["Department of Physical Sciences and Mathematics, University of the Philippines, Manila"],"affiliations":[{"raw_affiliation_string":"Department of Physical Sciences and Mathematics, University of the Philippines, Manila","institution_ids":["https://openalex.org/I5791819"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086938101","display_name":"Geoffrey A. Solano","orcid":"https://orcid.org/0000-0002-4223-1355"},"institutions":[{"id":"https://openalex.org/I5791819","display_name":"University of the Philippines Manila","ror":"https://ror.org/01rrczv41","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934","https://openalex.org/I5791819"]},{"id":"https://openalex.org/I103911934","display_name":"University of the Philippines System","ror":"https://ror.org/02hqkr514","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Geoffrey Solano","raw_affiliation_strings":["Department of Computer Science, University of the Philippines","Department of Physical Sciences and Mathematics, University of the Philippines, Manila"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of the Philippines","institution_ids":["https://openalex.org/I103911934"]},{"raw_affiliation_string":"Department of Physical Sciences and Mathematics, University of the Philippines, Manila","institution_ids":["https://openalex.org/I5791819"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037086358","display_name":"Henry N. Adorna","orcid":"https://orcid.org/0000-0001-5513-4039"},"institutions":[{"id":"https://openalex.org/I103911934","display_name":"University of the Philippines System","ror":"https://ror.org/02hqkr514","country_code":"PH","type":"education","lineage":["https://openalex.org/I103911934"]}],"countries":["PH"],"is_corresponding":false,"raw_author_name":"Henry N. Adorna","raw_affiliation_strings":["Department of Computer Science, University of the Philippines"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of the Philippines","institution_ids":["https://openalex.org/I103911934"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000283543"],"corresponding_institution_ids":["https://openalex.org/I5791819"],"apc_list":null,"apc_paid":null,"fwci":0.1459,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.5651736,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"37","issue":null,"first_page":"1","last_page":"6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/jaccard-index","display_name":"Jaccard index","score":0.8187611103057861},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5994791984558105},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5119060277938843},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.46855077147483826},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.4588404893875122},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4495851993560791},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.43604809045791626},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.32623475790023804},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3125384449958801},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2749171555042267},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.2488536834716797},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2358318567276001}],"concepts":[{"id":"https://openalex.org/C203519979","wikidata":"https://www.wikidata.org/wiki/Q865360","display_name":"Jaccard index","level":3,"score":0.8187611103057861},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5994791984558105},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5119060277938843},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.46855077147483826},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.4588404893875122},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4495851993560791},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.43604809045791626},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.32623475790023804},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3125384449958801},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2749171555042267},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2488536834716797},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2358318567276001},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/iisa.2015.7388007","is_oa":false,"landing_page_url":"https://doi.org/10.1109/iisa.2015.7388007","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"2015 6th International Conference on Information, Intelligence, Systems and Applications (IISA)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W143174683","https://openalex.org/W1758395617","https://openalex.org/W1973815317","https://openalex.org/W1998767819","https://openalex.org/W2010908637","https://openalex.org/W2029465164","https://openalex.org/W2036387645","https://openalex.org/W2067999844","https://openalex.org/W2081622831","https://openalex.org/W2097266496","https://openalex.org/W2098942945","https://openalex.org/W2101156500","https://openalex.org/W2123402141","https://openalex.org/W2125598538","https://openalex.org/W2135445920","https://openalex.org/W2142652836","https://openalex.org/W2154284350","https://openalex.org/W2158784643","https://openalex.org/W2170726034","https://openalex.org/W2181511771","https://openalex.org/W2282327668","https://openalex.org/W2308732270","https://openalex.org/W2340365916","https://openalex.org/W4241328656","https://openalex.org/W4252269516","https://openalex.org/W6649844278","https://openalex.org/W6675099714","https://openalex.org/W6685146747","https://openalex.org/W6695950373","https://openalex.org/W6698324246"],"related_works":["https://openalex.org/W1994775821","https://openalex.org/W2012019886","https://openalex.org/W2091133150","https://openalex.org/W2945869148","https://openalex.org/W2611195251","https://openalex.org/W2398781203","https://openalex.org/W2009279505","https://openalex.org/W4206503171","https://openalex.org/W4366711670","https://openalex.org/W2972216353"],"abstract_inverted_index":{"Phenograms":[0],"have":[1,31,42],"already":[2],"been":[3],"used":[4],"many":[5],"years":[6],"back":[7],"to":[8,98],"depict":[9],"taxonomic":[10],"relationships":[11],"among":[12,18],"organisms":[13],"based":[14],"on":[15],"overall":[16],"similarity":[17],"a":[19],"variety":[20],"of":[21,47,62,76,95,104,114],"characteristics":[22],"available":[23,79],"at":[24],"the":[25,59,88,115],"time.":[26],"These":[27,41],"recent":[28],"years,":[29],"however,":[30],"brought":[32],"phenomenal":[33],"advances":[34],"in":[35,38,44],"experimental":[36],"techniques":[37],"biological":[39,48,71,80],"research.":[40],"resulted":[43],"large":[45],"amounts":[46],"network":[49,60],"data":[50],"being":[51],"unearthed.":[52],"Among":[53],"these":[54,63],"are":[55,119,124],"metabolic":[56,64,93],"networks.":[57],"Analyzing":[58],"topology":[61],"networks":[65,94],"across":[66],"taxa":[67,97],"can":[68],"uncover":[69],"important":[70],"information":[72],"that":[73],"is":[74],"independent":[75],"other":[77],"currently":[78],"information.":[81],"This":[82],"study":[83],"explores":[84],"topological":[85],"similarities":[86],"between":[87],"glycolysis":[89],"and":[90,111,137],"citrate":[91],"cycle":[92],"different":[96],"build":[99],"phenograms.":[100],"A":[101],"novel":[102],"approach":[103],"generating":[105],"phenograms":[106,123],"using":[107,133],"Jaccard":[108],"Similary":[109],"Indices":[110],"Hamming":[112],"Distances":[113],"graphs":[116],"bit":[117],"codes":[118],"presented.":[120],"The":[121],"resulting":[122],"compared":[125],"with":[126],"those":[127],"generated":[128],"by":[129],"NCBI":[130],"gene":[131],"sequences":[132],"Phyllp":[134],"branch":[135],"matchings":[136],"maximum":[138],"consensus":[139],"trees.":[140]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
